RestrictByTypicalLosses: RestrictByTypicalLosses.

Description Usage Arguments Details Value

View source: R/RestrictByTypicalLosses.R

Description

RestrictByTypicalLosses will remove all formulas from a group which are inconsistent with an observed typical loss.

Usage

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RestrictByTypicalLosses(rdisop_res = NULL, tl = NULL,
  neutral_loss_cutoff = 0.5, punish = 0.1, substitutions = NULL)

Arguments

rdisop_res

Internal result structure of InterpretMSSpectrum.

tl

Typical loss, a mass with the according sum formula as name.

neutral_loss_cutoff

Cutoff in mDa for accepting an internal mass difference as a given neutral loss.

punish

If NULL remove fragments, if numeric 0..1 don't remove but punish the score.

substitutions

Potential substitutions like H/Na in ESI mode, provided as two column matrix.

Details

Not exported.

Value

Modified rdisop_res.


InterpretMSSpectrum documentation built on Sept. 20, 2017, 5:06 p.m.