ensembl.map: Ensemble Map

Description Usage Arguments Value Examples

View source: R/ensembl.map.R

Description

Function to generate a ensemble map file

Usage

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ensembl.map(host = "www.ensembl.org", dataset = "btaurus_snp",
  export.filters = FALSE, export.datasets = FALSE,
  filter = "variation_set_name",
  filter.values = "Illumina BovineSNP50 BeadChip", nchromo = NULL)

Arguments

host

Host to use in Ensembl (default: "www.ensembl.org" , alt: "plants.ensembl.org")

dataset

Dataset used in Ensembl

export.filters

Export possible filters for parameter filters

export.datasets

Export possible datasets for usage in parameter dataset

filter

Filters to apply in Ensembl

filter.values

Values for the used filters in Ensembl

nchromo

Number of chromosomes to export in the map

Value

Map-file for the use in creating.diploid

Examples

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map <- ensembl.map(host="www.ensembl.org", dataset="btaurus_snp",
         filter=list("variation_set_name"="Illumina BovineSNP50 BeadChip",
                     "chr_name"= 26))

MoBPS documentation built on March 31, 2020, 5:22 p.m.

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