sum.partitions: Sum on all subsets.

In PhylogeneticEM: Automatic Shift Detection using a Phylogenetic EM

Sum on all subsets.

Description

sum.partitions returns the sum on all I subset of [1,p], with |I|>m.

Usage

## S3 method for class 'partitions'
sum(A, N, K, p, m)

Arguments

A	a matrix with p rows and K column. Each row contains the number of marked partition in 1<=k<=K groups for one of the p children of a given node.
N	a matrix with p rows and K column. Each row contains the number of partition in 1<=k<=K groups for one of the p children of a given node
K	an integer. The number of groups wanted.
p	an integer. The number of daughters of a node.
m	an integer. The minimum cardinal of a subset allowed.

Details

This function applies sum.partitions.cardFixed to all integer between m and p, and sum the results.

Value

double : the result of the sum.

PhylogeneticEM documentation built on Aug. 31, 2022, 9:16 a.m.