View source: R/GEX_clonotype.R
GEX_clonotype | R Documentation |
Platypus V2: Integrates VDJ and gene expression libraries by providing cluster membership seq_per_vdj object and the index of the cell in the Seurat RNA-seq object.
GEX_clonotype(GEX.object, VDJ.per.clone)
GEX.object |
A single seurat object from automate_GEX function. This will likely be supplied as automate_GEX.output[[1]]. |
VDJ.per.clone |
Output from the VDJ_per_clone function. Each element in the list should be found in the output from the automate_GEX function. |
Returns a dataframe containing repertoire information, such as isotype, CDR sequences, mean number of UMIs. This output can be supplied to furhter packages VDJ_extract_sequences and VDJ_GEX_integrate
## Not run: GEX_clonotype(GEX.object=automate.GEX.output[[1]], VDJ.per.clone=vdj.per.clone.output) ## End(Not run)
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