PlatypusDB_find_CDR3s: CDR3 query function for PlatypusDB

In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis

CDR3 query function for PlatypusDB

Description

Queries for the occurrence of CDR3 sequences in public datasets on PlatypusDB.

Usage

PlatypusDB_find_CDR3s(VDJ.cdr3s.aa, VJ.cdr3s.aa, projects.to.search)

Arguments

VDJ.cdr3s.aa	Character A VDJ CDR3s amino acid sequence to search for
VJ.cdr3s.aa	Character A VJ CDR3s amino acid sequence to search for
projects.to.search	Optional character vector. Defaults to "ALL". Names of projects to search within.

Value

A list of subsets of VDJ matrices from projects containing the query VDJ CDR3 (out[[1]]), the VJ CDR3 (out[[2]]) and cells containing both the query VDJ and VJ CDR3s (out[[3]])

Examples

## Not run: 

public_clones <- PlatypusDB_find_CDR3s(VDJ.cdr3s.aa = "CMRYGNYWYFDVW"
, VJ.cdr3s.aa = "CLQHGESPFTF", projects.to.search = "ALL")


## End(Not run)

Platypus documentation built on Aug. 15, 2022, 9:08 a.m.