Spatial_selection_expanded_clonotypes: Selection of VGM[[1]]/VDJ data of the x more expanded...

In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis

Selection of VGM[[1]]/VDJ data of the x more expanded clonotypes.

Description

Selection of VGM[[1]]/VDJ data of the x more expanded clonotypes.

Usage

Spatial_selection_expanded_clonotypes(nb_clonotype, vgm_VDJ)

Arguments

nb_clonotype	Number that describes how many clonotypes we want to extract from the VGM[[1]].
vgm_VDJ	Data frame containing VDJ information, found in the vgm made by platypus. It must have x and y coordinates column and the column containing the factor to plot.

Value

Returns a data frame with only the data belonging to the number of selected clonotypes. The clonotypes being the most expanded ones.

Examples

## Not run: 
top_5_VDJ_data<-Spatial_selection_expanded_clonotypes(nb_clonotype = 5, vgm_VDJ = vgm$VDJ)

## End(Not run)

Platypus documentation built on Aug. 15, 2022, 9:08 a.m.