clonofreq.trans.data: Get information about the clonotype counts grouped by...

In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis

Get information about the clonotype counts grouped by transcriptome state(cell type).

Description

Dataframe with clonotype counts grouped by transcriptome state(cell type).

Usage

clonofreq.trans.data(all.contig.annotations, history, trans.names, top.n)

Arguments

all.contig.annotations	The output dataframe all_contig_annotation from function simulate.repertoire.
history	The dataframe history from simulate output.
trans.names	The names of cell types which are used in transcriptome.switch.prob argument in the simulation.
top.n	The top n abundant clones to be shown in the plot. If missing, all clones will be shown.

Value

a dataframe with clonotype counts grouped by transcriptome state(cell type).

Platypus documentation built on Aug. 15, 2022, 9:08 a.m.