get.avr.mut.data: Get information about somatic hypermutation in the...
In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis
View source: R/Echidna_other_functions.R
get.avr.mut.data R Documentation
Get information about somatic hypermutation in the simulation. This function return a barplot showing the average mutation.
Description
Get information about somatic hypermutation in the simulation. This function return a barplot showing the average mutation.
Usage
get.avr.mut.data(igraph.index.attr, history, clonotype.select, level)
Arguments
igraph.index.attr
A list "igraph.index.attr" from the simulation output.
history
A dataframe "history" from the simulation output.
clonotype.select
The selected clonotype index, can be the output of the function "select.top.clone.clone".
level
Can be "clone" or "cell". If "clone", the function will return average mutation on unique variant level. Otherwise it will return on cell level.
Value
a bar plot showing the average mutation on clone or cell level.
Platypus documentation built on Aug. 15, 2022, 9:08 a.m.
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View source: R/Echidna_other_functions.R
| get.avr.mut.data | R Documentation |
Get information about somatic hypermutation in the simulation. This function return a barplot showing the average mutation.
Description
Get information about somatic hypermutation in the simulation. This function return a barplot showing the average mutation.
Usage
get.avr.mut.data(igraph.index.attr, history, clonotype.select, level)
Arguments
igraph.index.attr |
A list "igraph.index.attr" from the simulation output. |
history |
A dataframe "history" from the simulation output. |
clonotype.select |
The selected clonotype index, can be the output of the function "select.top.clone.clone". |
level |
Can be "clone" or "cell". If "clone", the function will return average mutation on unique variant level. Otherwise it will return on cell level. |
Value
a bar plot showing the average mutation on clone or cell level.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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