get.umap: Further process the seurat object from simulated transciptome...
In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis
View source: R/Echidna_other_functions.R
get.umap R Documentation
Further process the seurat object from simulated transciptome output and make UMAP ready for plotting.
Description
Further process the seurat object from simulated transciptome output and make UMAP ready for plotting.
Usage
get.umap(gex, d, reso)
Arguments
gex
output from get.elbow function.
d
dims argurment of in Seurat::FindNeighbors() and Seurat::RunUMAP
reso
resolution argument in Seurat::FindClusters()
Value
Further processed seurat object from simulated transciptome output with UMAP ready for plotting.
Platypus documentation built on Aug. 15, 2022, 9:08 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/Echidna_other_functions.R
| get.umap | R Documentation |
Further process the seurat object from simulated transciptome output and make UMAP ready for plotting.
Description
Further process the seurat object from simulated transciptome output and make UMAP ready for plotting.
Usage
get.umap(gex, d, reso)
Arguments
gex |
output from get.elbow function. |
d |
dims argurment of in Seurat::FindNeighbors() and Seurat::RunUMAP |
reso |
resolution argument in Seurat::FindClusters() |
Value
Further processed seurat object from simulated transciptome output with UMAP ready for plotting.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.