mus_b_trans: mus_b_trans A data frame contains mouse B cell average gene...

In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis

mus_b_trans A data frame contains mouse B cell average gene expression for multiple cell types, with the rows representing the gene names, column names representing the cell type names. The original single cell sequencing data is retrieved from 10xgenomics and combined with experimental data The expression level for different cell types are obtained by calculating the average expression after sorting the original data by markers as shown below.

Description

mus_b_trans A data frame contains mouse B cell average gene expression for multiple cell types, with the rows representing the gene names, column names representing the cell type names. The original single cell sequencing data is retrieved from 10xgenomics and combined with experimental data The expression level for different cell types are obtained by calculating the average expression after sorting the original data by markers as shown below.

Usage

data("mus_b_trans")

Format

A data frame with 26538 rows and 4 variables, with the rows representing the gene names, column names representing the cell type names.

NaiveBcell

Cd19+;Cd27-;Cd38-

GerminalcenterBcell

Fas+;Cd19+

Plasmacell

Sdc1+

MemoryBcell

Cd38+;Fas-

Source

https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_c57bl6_pbmc_5gex; https://support.10xgenomics.com/single-cell-vdj/datasets/3.0.0/vdj_v1_mm_balbc_pbmc_5gex

Platypus documentation built on Aug. 15, 2022, 9:08 a.m.