umap.top.highlight: Set idents for top abundant clones in Seurat object, get...
In Platypus: Single-Cell Immune Repertoire and Gene Expression Analysis
View source: R/Echidna_other_functions.R
umap.top.highlight R Documentation
Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.
Description
Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.
Usage
umap.top.highlight(gex, all.contig.annotations, top.n)
Arguments
gex
output from get.umap function.
all.contig.annotations
The output dataframe all_contig_annotations from simulation.
top.n
The top n abundant clones to be shown in the plot. If missing, all clones will be shown.
Value
a Seurat object ready for highlight the top abundant clones in UMAP
Platypus documentation built on Aug. 15, 2022, 9:08 a.m.
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View source: R/Echidna_other_functions.R
| umap.top.highlight | R Documentation |
Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.
Description
Set idents for top abundant clones in Seurat object, get ready for highlight the top abundant clones in UMAP.
Usage
umap.top.highlight(gex, all.contig.annotations, top.n)
Arguments
gex |
output from get.umap function. |
all.contig.annotations |
The output dataframe all_contig_annotations from simulation. |
top.n |
The top n abundant clones to be shown in the plot. If missing, all clones will be shown. |
Value
a Seurat object ready for highlight the top abundant clones in UMAP
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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