Nothing
library(R2admb)
## reed frog example, but make variable names longer
## source("~/lib/R/pkgs/R2admb/pkg/R/admb-funs.R")
ReedfrogSizepred <-
data.frame(TBL = rep(c(9,12,21,25,37),each=3),
Kill = c(0,2,1,3,4,5,0,0,0,0,1,0,0,0,0L))
setup_admb()
fn <- "longvars"
tplfile <- paste(fn,"tpl",sep=".")
file.copy(system.file("tplfiles",tplfile,package="R2admb"),
tplfile)
m1 <- do_admb(fn,
data=c(list(nobs=nrow(ReedfrogSizepred),
nexposed=rep(10,nrow(ReedfrogSizepred))),
ReedfrogSizepred),
profile=TRUE,
profile.opts=list(pars=c("ccc","dddd","ggggggg")),
params=list(ccc=0.45,dddd=13,ggggggg=1),
bounds=list(ccc=c(0,1),dddd=c(0,50),ggggggg=c(-1,25)),
run.opts=run.control(checkparam="write",
checkdata="write"),
workdir="tmp",
verbose=TRUE)
m1P <- do_admb(fn,
data=c(list(nobs=nrow(ReedfrogSizepred),
nexposed=rep(10,nrow(ReedfrogSizepred))),
ReedfrogSizepred),
params=as.list(coef(m1)),
## bounds=list(c=c(0,1),d=c(0,50),g=c(-1,25)),
## bounds=list(c=c(0.1,1),d=c(5,50),g=c(-1,25)),
bounds=list(c=c(0.3,0.6),d=c(10,15),g=c(15,20)),
run.opts=run.control(checkparam="write",
checkdata="write"),
profile=TRUE,
verbose=TRUE,
profpars=c("c","d","g"))
## argh -- must fix this. don't know where the errors are coming from --
## was OK in a previous version
m1MC <- do_admb(fn,
data=c(list(nobs=nrow(ReedfrogSizepred),
nexposed=rep(10,nrow(ReedfrogSizepred))),
ReedfrogSizepred),
params=list(c=0.45,d=13,g=1),
bounds=list(c=c(0,1),d=c(0,50),g=c(-1,25)),
run.opts = run.control(checkparam="write",
checkdata="write"),
mcmc=TRUE,
mcmc.opts=mcmc.opts(mcmcpars=c("c","d","g")))
save("m1","m1P","m1MC",file="Reedfrog_runs.RData")
## clean up
unlink(c("reedfrogsizepred0","reedfrogsizepred0.tpl","reedfrogsizepred0_gen.tpl"))
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.