R/data.R

In SAVER: Single-Cell RNA-Seq Gene Expression Recovery

#' Mouse brain single-cell RNA-seq dataset
#'
#' 3,529 genes and 200 cells from a mouse brain scRNA-seq dataset.
#'
#' @references Zeisel, A., Munoz-Manchado, A. B., Codeluppi, S.,
#' Lonnerberg, P., La Manno, G., Jureus, A., ... Linnarsson, S. (2015). Cell
#' types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
#' \emph{Science, 347}(6226), 1138-1142.
#'
"linnarsson"

#' SAVER recovered mouse brain single-cell RNA-seq dataset
#'
#' Output of running `saver` on the `linnarsson` dataset.
#'
#' @references Zeisel, A., Munoz-Manchado, A. B., Codeluppi, S.,
#' Lonnerberg, P., La Manno, G., Jureus, A., ... Linnarsson, S. (2015). Cell
#' types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
#' \emph{Science, 347}(6226), 1138-1142.
#'
"linnarsson_saver"