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 SoilR: Models of Soil Organic Matter Decomposition
 156: ~~ Methods for Function 'getFormat' ~~
~~ Methods for Function getFormat ~~
Description
~~ Methods for function getFormat
~~
Methods
signature(object = "BoundFc")

getFormat_method__BoundFc
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 1: ~~ Methods for Function 'AbsoluteFractionModern' ~~
 10: constructor
 100: Implementation of a twopool C14 model with series structure
 101: Implementation of the Yasso07 model
 102: Implementation of the Yasso model.
 103: ~~ Methods for Function 'as.character' ~~
 104: creates a character representation of the object in question
 105: convert BoundInFlux Objects to something printable.
 106: convert TimeMap Objects to something printable.
 107: ~~ Methods for Function 'availableParticleProperties' ~~
 108: ~~ Methods for Function 'availableParticleSets' ~~
 109: Implementation of the microbial model Bacwave (bacterial...
 11: constructor
 110: Binding of pre and postbomb Delta14C curves
 111: ~~ Methods for Function 'computeResults' ~~
 112: deSolve lsoda wrapper
 113: Soil CO2 efflux from incubation experiments
 114: Effects of temperature on decomposition rates according the...
 115: Effects of temperature on decomposition rates according the...
 116: Effects of temperature on decomposition rates according the...
 117: Effects of temperature on decomposition rates according to...
 118: Effects of temperature on decomposition rates according to...
 119: Effects of temperature on decomposition rates according to...
 12: constructor
 120: Effects of temperature on decomposition rates according to a...
 121: Effects of temperature on decomposition rates according to a...
 122: Effects of temperature on decomposition rates according to a...
 123: Effects of temperature on decomposition rates according to...
 124: Effects of temperature on decomposition rates according to...
 125: Effects of temperature on decomposition rates according to a...
 126: Effects of moisture on decomposition rates according to the...
 127: Effects of moisture on decomposition rates according to the...
 128: Effects of moisture on decomposition rates according to the...
 129: Effects of moisture on decomposition rates according to the...
 13: constructor
 130: Effects of moisture on decomposition rates according to the...
 131: Effects of moisture on decomposition rates according to the...
 132: Effects of moisture on decomposition rates according to the...
 133: Effects of moisture on decomposition rates according to the...
 134: Effects of moisture on decomposition rates according to the...
 135: Effects of moisture on decomposition rates according to the...
 136: ~~ Methods for Function 'getAccumulatedRelease' ~~
 137: Calculates the accumulated carbon release from the pools as a...
 138: time integrals of release fluxes per pool
 139: ~~ Methods for Function 'getC' ~~
 14: constructor
 140: Calculates the C content of the pools
 141: ~~ Methods for Function 'getC14' ~~
 142: Calculates the mass of radiocarbon (14C fraction times C...
 143: getC14 method Model 14
 144: getC method Model
 145: ~~ Methods for Function 'getDecompOp' ~~
 146: ~~ Methods for Function 'getDotOut' ~~
 147: ~~ Methods for Function 'getF14' ~~
 148: Calculates the 14C fraction of all pools
 149: ~~ Methods for Function 'getF14C' ~~
 15: constructor
 150: Calculates the average radiocarbon fraction weighted by the...
 151: read access to the models F14C variable
 152: ~~ Methods for Function 'getF14R' ~~
 153: Calculates the average radiocarbon fraction weighted by the...
 154: average radiocarbon fraction weighted by carbonrelease
 155: radiocarbon
 156: ~~ Methods for Function 'getFormat' ~~
 157: extract the format string
 158: ~~ Methods for Function 'getFunctionDefinition' ~~
 159: getFunctionDefinition
 16: Class '"BoundInFlux"'
 160: function definition
 161: getFunctionDefinition method BoundInFlux
 162: getFunctionDefinition method BoundLinDecompOp
 163: creates a constant timedependent function and returns it
 164: getFunctionDefinition method DecompositionOperator
 165: getFunctionDefinition method TimeMap
 166: ~~ Methods for Function 'getInFluxes' ~~
 167: ~~ Methods for Function 'getInitialValues' ~~
 168: ~~ Methods for Function 'getMeanTransitTime' ~~
 169: Access to the mean transit time
 17: ~~ Methods for Function 'BoundInFlux' ~~
 170: compute the mean transit time
 171: ~~ Methods for Function 'getNumberOfPools' ~~
 172: ~~ Methods for Function 'getOutputFluxes' ~~
 173: ~~ Methods for Function 'getOutputReceivers' ~~
 174: ~~ Methods for Function 'getParticleMonteCarloSimulator' ~~
 175: ~~ Methods for Function 'getReleaseFlux' ~~
 176: Calculates the release of C from each pool
 177: ~~ Methods for Function 'getReleaseFlux14' ~~
 178: Calculates the mass of radiocarbon in the release flux (14C...
 179: 14C respiration rate for all pools
 18: generic constructor
 180: get the release rate for all pools
 181: ~~ Methods for Function 'getTimeRange' ~~
 182: getTimeRange
 183: ask for the boundaries of the underlying time interval
 184: time domain of the function
 185: ask for the boundaries of the underlying time interval
 186: return an (infinite) time range since the operator is...
 187: ask for the boundaries of the underlying time interval
 188: ask for the boundaries of the underlying time interval
 189: ~~ Methods for Function 'getTimes' ~~
 19: convert to BoundInFlux
 190: Extracts the times argument
 191: getTimes method Model
 192: ~~ Methods for Function 'getTransferCoefficients' ~~
 193: ~~ Methods for Function 'getTransferMatrix' ~~
 194: ~~ Methods for Function 'getTransitTimeDistributionDensity'...
 195: methods for transit time distributions
 196: compute the TransitTimeDistributionDensity
 197: ~~ Methods for Function 'getValues' ~~
 198: ~~ Methods for Function 'initialize' ~~
 199: internal constructor (new)
 2: ~~ Methods for Function...
 20: constructor
 200: internal constructor
 201: initialize called by (new)
 202: internal constructor
 203: initialize called by (new)
 204: internal constructor for Model objects
 205: An internal constructor for 'Model_14' objects not...
 206: initialize called by (new)
 207: Add lines with the output of 'getC14', 'getC', or...
 208: ~~ Methods for Function 'plot' ~~
 209: Plots the output of 'getC14' for each pool over time
 21: constructor
 210: Plots the output of 'getC' or 'getReleaseFlux' for each pool...
 211: plot method Model
 212: ~~ Methods for Function 'print' ~~
 213: print method Model
 214: ~~ Methods for Function 'show' ~~
 215: show method Model
 216: ~~ Methods for Function 'summary' ~~
 217: summary method Model
 218: Estimation of the turnover time from a soil radiocarbon...
 219: ~~ Methods for Function '$' ~~
 22: constructor
 220: ~~ Methods for Function '[' ~~
 221: ~~ Methods for Function '[[' ~~
 222: ~~ Methods for Function '[[<' ~~
 223: (experimenta) partially overload [ ] for models
 23: constructor
 24: Class '"BoundLinDecompOp"'
 25: ~~ Methods for Function 'BoundLinDecompOp' ~~
 26: Generic constructor
 27: convert a ConstLinDecompOp to a BoundLinDecompOp
 28: create a BoundLinDecompOp from a TimeMap
 29: a constructor
 3: Converts its argument to an Absolute Fraction Modern...
 30: a constructor
 31: Atmospheric 14C fraction
 32: Postbomb atmospheric 14C fraction
 33: creates an object containing the initial values for the 14C...
 34: Class '"ConstLinDecompOp"'
 35: ~~ Methods for Function 'ConstLinDecompOp' ~~
 36: Generic constructor
 37: construct from matric
 38: Class '"DecompOp"'
 39: ~~ Methods for Function 'DecompOp' ~~
 4: Converts from Delta14C to Absolute Fraction Modern
 40: pass through constructor
 41: creates a BoundLinDecompOp from a TimeMap object
 42: creates a ConstanDecompOp from a matrix
 43: Class '"DecompositionOperator"'
 44: ~~ Methods for Function 'Delta14C' ~~
 45: ~~ Methods for Function...
 46: Converts its argument from an Absolute Fraction Modern to a...
 47: Converts Absolute Fraction Modern values to Delta14C
 48: Converts to Delta14C format
 49: convert to Absolute Fraction Normal values
 5: Converts from Delta14C to Absolute Fraction Modern
 50: Implementation of a the sixpool C14 model proposed by...
 51: ~~ Methods for Function 'GeneralModel' ~~
 52: A general constructor
 53: ~~ Methods for Function 'GeneralModel_14' ~~
 54: A general constructor
 55: a constructor for class Model
 56: a constructor for class Model_14
 57: a constructor for class Model < 14
 58: a constructor for class Model_ 14
 59: a constructor for class Model
 6: convert to Absolute Fraction Normal values
 60: a constructor for class Model
 61: a constructor for class Model
 62: Delta14C in soil CO2 efflux from Harvard Forest
 63: Atmospheric radiocarbon for the period 19502010 from Hua et...
 64: Implementation of the Introductory Carbon Balance Model...
 65: Class '"InFlux"'
 66: ~~ Methods for Function 'InFlux' ~~
 67: pass through constructor
 68: create a BoundInFlux from a TimeMap object
 69: Northern Hemisphere atmospheric radiocarbon for the prebomb...
 7: Class '"BoundFc"'
 70: Atmospheric radiocarbon for the 050,000 yr BP period
 71: Class '"Model"'
 72: ~~ Methods for Function 'Model' ~~
 73: A general constructor
 74: Class '"Model_14"'
 75: ~~ Methods for Function 'Model_14' ~~
 76: A general constructor
 77: general constructor for class Model
 78: Implementation of a one pool model
 79: Implementation of a onepool C14 model
 8: ~~ Methods for Function 'BoundFc' ~~
 80: ParallelModel
 81: helper function to compute respiration coefficients
 82: Implementation of the RothCModel
 83: Models of Soil Organic Matter Decomposition
 84: Implementation of a three pool model with feedback structure
 85: Implementation of a threepool C14 model with feedback...
 86: Implementation of a three pool model with parallel structure
 87: Implementation of a threepool C14 model with parallel...
 88: Implementation of a three pool model with series structure
 89: Implementation of a threepool C14 model with series...
 9: generic constructor
 90: Implementation of a 6pool MichaelisMenten model
 91: Class '"TimeMap"'
 92: TimeMap from Dataframe
 93: basic constructor of the class TimeMap.
 94: Implementation of a two pool model with feedback structure
 95: Implementation of a twopool C14 model with feedback...
 96: Implementation of a twopool MichaelisMenten model
 97: Implementation of a two pool model with parallel structure
 98: Implementation of a twopool C14 model with parallel...
 99: Implementation of a two pool model with series structure
 manMan/as.character: creates a character representation of the object in question
 manMan/C14Atm: Atmospheric 14C fraction
 manMan/C14Atm_NH: Postbomb atmospheric 14C fraction
 manMan/eCO2: Soil CO2 efflux from incubation experiments
 manMan/HarvardForest14CO2: Delta14C in soil CO2 efflux from Harvard Forest
 manMan/Hua2013: Atmospheric radiocarbon for the period 19502010 from Hua et...
 manMan/IntCal09: Northern Hemisphere atmospheric radiocarbon for the prebomb...
 manMan/IntCal13: Atmospheric radiocarbon for the 050,000 yr BP period