Nothing
medianNormalize produces expected verbose outputCode
result <- medianNormalize(test_data, verbose = TRUE)
Output
Data validation passed for median normalization.
Standard deliverable checks:
- Hybridization normalization: PASS
- medNormInt (controls): PASS
- Plate scale normalization: PASS
- Study samples not already normalized: PASS
Three dilution setup detected (standard setup).
Message
> Normalization scale factors already exist: "NormScale_20, NormScale_0_005, NormScale_0_5" - they will be replaced with new scale factors
> Building internal reference from study samples (SampleType == 'Sample')
v Processing dilution '0_005' with 50 analytes
v Processing dilution '0_5' with 50 analytes
v Processing dilution '20' with 50 analytes
Output
Recalculating RowCheck values based on normalization acceptance criteria...
RowCheck values updated for 3 samples.
- PASS: 3 samples
- FLAG: 0 samples
- Acceptance criteria: scale factors within [ 0.4 , 2.5 ]
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