tests/testthat/_snaps/medianNormalize.md

medianNormalize produces expected verbose output

Code
  result <- medianNormalize(test_data, verbose = TRUE)
Output
  Data validation passed for median normalization.
  Standard deliverable checks:
    - Hybridization normalization: PASS 
    - medNormInt (controls): PASS 
    - Plate scale normalization: PASS 
    - Study samples not already normalized: PASS 
  Three dilution setup detected (standard setup).
Message
  > Normalization scale factors already exist: "NormScale_20, NormScale_0_005, NormScale_0_5" - they will be replaced with new scale factors
  > Building internal reference from study samples (SampleType == 'Sample')
  v Processing dilution '0_005' with 50 analytes
  v Processing dilution '0_5' with 50 analytes
  v Processing dilution '20' with 50 analytes
Output
  Recalculating RowCheck values based on normalization acceptance criteria...
  RowCheck values updated for 3 samples.
    - PASS: 3 samples
    - FLAG: 0 samples
    - Acceptance criteria: scale factors within [ 0.4 ,  2.5 ]


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SomaDataIO documentation built on May 5, 2026, 1:07 a.m.