NEWS.md

In SqueakR: An Experiment Interface for 'DeepSqueak' Bioacoustics Research

SqueakR 1.3.0

version 1.3.0 [GitHub release] [CRAN release]

• Added animal field for each added experiment data, which updates experiment metadata for animals field. Updated compatibility to match semi-automatic and automatic SqueakR pipelines, as well as describe_experiment() function. Updated documentation to reflect the change
• Added Plotly sunburst plot (to functions list and dashboard) to graph proportions of collected data done per experimenter, as well as data collected per animal per group
• Added Plotly 3D surface plot (plotSurface()) using 2D kernel density estimation to represent call density against principal frequency and call length
• Added functions for unblinding experimenters to data
• Added function — plotContours() — which renders plotSurface() as a 2D rendering, flanked by histograms displaying distributions of principal frequency and call length
• Standardized some function naming (plotSurface instead of plotCallDataSurface, etc)

version 1.2.8

• Used report package for analyses: added functions for reporting descriptive statistics for grouped data in SqueakR Dashboard tab
• Deprecated SqueakR Dashboard repository on GitHub and merged functions into SqueakR
• Added 3D cluster plot visualization function plotClusters() against call length (z), principal frequency (x) and mean power (y) using plotly, available in base SqueakR and on dashboard

version 1.2.5

• Merged SqueakR dashboard into SqueakR package! Dashboard can now be run after loading the package by running squeakRDashboard()
• Added function for calculating ANOVA between groups
• Added ANOVA tab on SqueakR Dashboard for determining statistical significance between call features

version 1.2.0

• Added fully-automatic pipeline function (autosqueakRpipeline()) which references Google Sheet to add data without experimenter input for every file
• Renamed experiment_pipeline() to semisqueakRpipeline()
• Added function (remove_experiment_data()) to remove data from experiment object
• Updated vignette to reflect package changes

version 1.0.0

• Recreated NEWS.md file to track changes to the package.
• Added functions for generating experiment and analyzing data between experimental groups.
• Added visualizations including ethnograms, histograms, box-plots, and correlation matrices.

version 0.5.1

• Basic set of functions without all plotting functions
• Bug fixes
• Prepared development release for Mac
• Prepared development release for Windows

version 0.0.0.9000

NEWS.md setup

• added development NEWS.md file

SqueakR documentation built on June 28, 2022, 5:06 p.m.