Man pages for SqueakR
An Experiment Interface for 'DeepSqueak' Bioacoustics Research
| add_timepoint_data | Add Timepoint Data |
| add_to_experiment | Add Scored Data to Experiment Object |
| analyze_factor | Analyze Factor |
| autosqueakRpipeline | Fully-Automatic Experiment Creation |
| create_experiment | Create New Experiment |
| deepsqueak_data | DeepSqueak Example Data |
| describe_experiment | Describe Experiment |
| plotClusters | 3D Call Clusters (Custom Label) Plot |
| plotContours | 2D Call Contours |
| plotCorrelations | Plot Correlation Matrix |
| plotDeltaHistogram | Plot Delta Frequency Histogram |
| plotDensitySplitByCustom | Plot Density Graph, Splitting Groups by Custom Label |
| plotDensitySplitByDuration | Plot Density Graph, Splitting Groups by Duration |
| plotDensitySplitByFrequency | Plot Density Graph, Splitting Groups by Frequency |
| plotDensityStackedByCustom | Plot Density Graph Stacked by Custom Labels |
| plotDensityStackedByDuration | Plot Density Graph Stacked by Duration |
| plotDensityStackedByFrequency | Plot Density Graph Stacked by Frequency |
| plotEthnogram | Plot Ethnogram |
| plotEthnogramSplitByTonality | Plot Tonality-colored Ethnogram |
| plotPrincipalBoxplot | Plot Principal Frequency Box-Plot |
| plotSummaryPDF | Export PDF |
| plotSunburstAnimals | Sunburst Plot for Animal Distribution |
| plotSunburstExperimenters | Sunburst Plot for Experimenter Distribution |
| plotSurface | 3D Surface Plot for Call Datasets |
| remove_experiment_data | Remove Data from Experiment File |
| save_experiment | Save Experiment Locally |
| score_timepoint_data | Score Timepoint Data |
| semisqueakRpipeline | Semi-Automatic Experiment Creation |
| squeakrANOVA | Generate ANOVA tables for Detected Calls |
| squeakRDashboard | Launch SqueakR Dashboard |
| SqueakR-package | SqueakR: An Experiment Interface for 'DeepSqueak'... |
| squeakrSummary | Summary Statistics for Experiment |
| unblind_all_ids | Decode Experiment IDs |
| unblind_data_id | Find Matching Experiment ID |
| unblind_data_name | Find Matching Experiment Name |
| update_experiment | Updates Experiment Object Metadata |
