tests/runTests.R

In TKF: Pairwise Distance Estimation with TKF91 and TKF92 Model

#BiocGenerics:::testPackage("TKF")
testPackage <- function (pkgname, subdir = "unitTests",
                          pattern = "^test_.*\\.R$")
{
    .failure_details <- function(result) {
        res <- result[[1L]]
        if (res$nFail > 0 || res$nErr > 0) {
            Filter(function(x) length(x) > 0, lapply(res$sourceFileResults,
                function(fileRes) {
                  names(Filter(function(x) x$kind != "success",
                    fileRes))
                }))
        }
        else list()
    }
    require(pkgname, quietly = TRUE, character.only = TRUE) ||
        stop("package '", pkgname, "' not found")
    dir <- system.file(subdir, package = pkgname)
    if (nchar(dir) == 0L)
        stop("unable to find unit tests, no '", subdir, "' dir")
    require("RUnit", quietly = TRUE) || stop("RUnit package not found")
    RUnit_opts <- getOption("RUnit", list())
    RUnit_opts$verbose <- 0L
    RUnit_opts$silent <- TRUE
    RUnit_opts$verbose_fail_msg <- TRUE
    options(RUnit = RUnit_opts)
    suite <- defineTestSuite(name = paste(pkgname, "RUnit Tests"),
        dirs = dir, testFileRegexp = pattern, rngKind = "default",
        rngNormalKind = "default")
    result <- runTestSuite(suite)
    cat("\n\n")
    printTextProtocol(result, showDetails = FALSE)
    if (length(details <- .failure_details(result)) > 0) {
        cat("\nTest files with failing tests\n")
        for (i in seq_along(details)) {
            cat("\n  ", basename(names(details)[[i]]), "\n")
            for (j in seq_along(details[[i]])) {
                cat("    ", details[[i]][[j]], "\n")
            }
        }
        cat("\n\n")
        stop("unit tests failed for package ", pkgname)
    }
    result
}

testPackage("TKF")