NEWS.md

In UCSCXenaShiny: Interactive Analysis of UCSC Xena Data

UCSCXenaShiny 1.1.10

• Fixed check issue due to internet access (#253).

UCSCXenaShiny 1.1.9

• Added cancer type control for PCAWG survival analysis.
• Added TCGA batch id from MDA.

UCSCXenaShiny 1.1.8

• Fixed issue to set mislabelled color in pcawg pan-cancer analysis (#247, Thanks to Tangjian Li).
• Fixed issue in querying gene signature in general analysis page (#244).
• Fixed issue "Radar plot “stemness” does not plot the “ACC” tumor type" (#242).

UCSCXenaShiny 1.1.7

• Added option include.Tumor.only to control if include type
• Set default theme if flatly not available.
• Added example to generate radar plot, close #239

UCSCXenaShiny 1.1.6

• Added description of extra datasets.

UCSCXenaShiny 1.1.5

• Fixed survival KM plot output issue due to ggsave() failure in General Analysis page. (#230)

UCSCXenaShiny 1.1.4

• Fixed the colnames being changed by as.data.frame() when querying a symbol with unvalid R name. (Related to #234)
• Added more informative error for scatter plot in General Analysis tab. (#233)
• Reversed default color setting for groups in survival analysis to fit conventional color grouping (in Xena). (#232, thanks to feedback from Enrique)
• Supported known science palette and custom colors for survival analysis in Quick PanCan Analysis tab.

UCSCXenaShiny 1.1.3

• Data check. (#225)
• Fixed survival KM plot output issue due to ggsave() failure. (#230)

UCSCXenaShiny 1.1.2

• Fixed value query for gene signature with purrr lambda function.
• Updated dataset doc.
• Uploaded zenodo link.
• Uploaded this tool to conda forge, the user can install it from conda now. For more details, please read the README file.

UCSCXenaShiny 1.1.1

• Updated citation.
• Fixed the data loading bug due to function scope problem (#222).

UCSCXenaShiny 1.1.0

• Supported uploading data files for analysis.
• Improved user experience.
• Added more contents in README.
• Corrected LICENSE (this package is built on the top of code with GPLv3 LICENCE).
• Added docker image for UCSCXenaShiny https://hub.docker.com/r/shixiangwang/ucscxenashiny.

UCSCXenaShiny 1.0.1

• Added a package doc site link in usage navbar list.
• Fixed bug of PCAWG survival analysis (#209).

UCSCXenaShiny 1.0.0

This the first stable and formal version of UCSCXenaShiny. We have refactored the whole R package and corresponding Shiny for service.

Enjoy yourself.

UCSCXenaShiny documentation built on March 7, 2023, 7 p.m.