Description Usage Arguments Slots
DiversityTest
defines the signifance of diversity (D) differences at a
fixed diversity order (q).
1 2 3 4 5 |
x |
DiversityTest object. |
y |
ignored. |
... |
arguments to pass to plotDiversityTest. |
tests
data.frame describing the significance test results with columns:
TEST
: string listing the two groups tested.
DELTA_MEAN
: mean of the D bootstrap delta
distribution for the test.
DELTA_SD
: standard deviation of the D
bootstrap delta distribution for the test.
PVALUE
: p-value for the test.
summary
data.frame containing summary statistics for the diversity index bootstrap distributions, at the given value of q, with columns:
GROUP
: the name of the group.
MEAN
: mean of the D bootstrap distribution.
SD
: standard deviation of the D bootstrap
distribution.
groups
character vector of groups retained in diversity calculation.
q
diversity order tested (q).
n
numeric vector indication the number of sequences sampled from each group.
nboot
number of bootstrap realizations.
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