BIOMOD.models.out getters

Description

Functions to get attributs of BIOMOD_Modeling outputs

Usage

1
2
3
4
5
6
7

Arguments

obj

"BIOMOD.models.out" object

...

extra arguments (see details)

Details

... available values :

  • get_evaluations

    • as.data.frame:"logical", ( FALSE by default ) if TRUE, a standardized data.frame will be produced else an 4 dimentions array is returned

  • get_calib_lines

  • get_predictions (for BIOMOD_Modeling() outputs only)

    • as.data.frame:logical(default FALSE). If TRUE, models predictions will be returned as data.frame rather than array

    • evaluation:logical (default FALSE). If TRUE, model prediction over evaluation data will be returned

  • get_formal_data

    • subinfo:character. Flag defining a specific information to extract from "BIOMOD.formated.data" object. Supported values are:

      • NULL: (default) the whole "BIOMOD.formated.data" object is returned

      • 'MinMax': All explanatory variables ranges returned

      • 'resp.var': Response variables vector returned

      • 'eval.resp.var': Evaluation response variables vector returned

      • 'expl.var': Explanatory variables data.frame returned

      • 'eval.expl.var': Evaluation explanatory variables data.frame returned

      • 'expl.var.names': Explanatory variables names returned

Value

  1. get_predictions: an array (or a data.frame) containing models predictions over calibrating and testing data (those used for evaluate models)

  2. get_calib_lines: an array (or a data.frame) having the same dimention than the outpurt of get_predictions() of logical values. All lines containing TRUE have been used to calibrate the model

  3. get_evaluations: an array, a data.frame or a list containing models evaluation scores

  4. get_variables_importance: an array containing models variables importances

  5. get_options: a "BIOMOD.Model.Options" reporting options used to build individual models

  6. get_formal_data: a "BIOMOD.formated.data" object containing data used for models building and evavaluation, or a part of this object

  7. get_built_models: a character vector giving the names of models succefully computed

Author(s)

Wilfried Thuiller, Damien Georges

See Also

help

Want to suggest features or report bugs for rdrr.io? Use the GitHub issue tracker.