Description Usage Arguments Details Value See Also
View source: R/create_graphs.R
make_glm_brainGraph
will create graphs with attributes specific to the
results of brainGraph_GLM
or mtpc
. The function
returns a list, with one element for each specified contrast.
1  make_glm_brainGraph(res.glm, atlas, ...)

res.glm 
List as output by 
atlas 
Character string specifying the brain atlas to use 
... 
Other arguments passed to 
This function only creates a graph for vertexlevel analyses.
A list of igraph
graph objects (length equal to the number of
contrasts) with additional attributes:
Graph 
name (contrast name), outcome (the outcome variable), alpha (the significance level); for MTPC: tau.mtpc, S.mtpc, S.crit, A.crit 
Vertex 
size2 (tstatistic), size (the tstat
transformed for visualization purposes), p (equal to 1p),
p.fdr (equal to 1p_{FDR}, the FDRadjusted pvalue),
gamma (the contrast of parameter estimaties, se (the
standard error of gamma); A.mtpc, sig (binary
indicating whether 
Other Graph creation functions: make_brainGraph
,
make_ego_brainGraph
,
make_empty_brainGraph
,
make_mediate_brainGraph
,
make_nbs_brainGraph
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