mkvig: Compile and View Vignettes from the Command Line

In canprot: Chemical Metrics of Differentially Expressed Proteins

Description

Compile the indicated vignette and open it in the browser.

Usage

  mkvig(vig = NULL)

Arguments

vig	character, name of a vignette without .Rmd extension

Details

In order to reduce package space and check time, pre-built vignettes are not included in the package. mkvig is a convenience function to compile the vignettes on demand and view them in a browser.

The available vignettes for mkvig are listed here:

• Cell culture – hypoxia, secreted, osmotic_bact, osmotic_euk, osmotic_halo, glucose, 3D

• Cancer – breast, colorectal, liver, lung, pancreatic, prostate

Note that pandoc (including pandoc-citeproc), as a system dependency of rmarkdown, is required to build the vignettes.

See Also

The vignettes can also be run using e.g. demo("glucose"), and through the interactive help system (help.start > Packages > canprot > Code demos).

Examples

## Not run: 
mkvig("colorectal")

## End(Not run)

canprot documentation built on Jan. 17, 2022, 9:06 a.m.