pracma::pinv()
replaced pseudoinverse()
.
Added param_file argument to load_input_and_run_cape()
.
Added ability for cape2mpp()
to recognize and format multi-parent crosses
Added ability to read in multi-parent crosses in qtl format.
Fixed display of marker effects in plot_singlescan()
.
Updated missing parameters from load_input_and_run_cape()
documentation
Changed binary file extensions of saved files to .RData.
Additional minor bug fixes.
run_cape()
now runs a full cape analysis from a yml parameter file.
Dots were replaced with underscores in all function names.
All code was refactored to S6.
qtl2cape()
now accepts a covariate matrix as an argument.
Added demos starting from different file formats.
Added formatting capabilities for PLINK files.
bin_curve()
was updated to handle very short vectors.
Additional minor bug fixes.
Fixed covariate handling in pairscan()
.
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