R/ibd_phylo.R

In corncob: Count Regression for Correlated Observations with the Beta-Binomial

#' IBD data.
#'
#' A phyloseq object with an OTU table and sample data from an IBD microbiome study.
#'
#' @format A phyloseq-class experiment-level object with an OTU table and sample data.
#' @references Papa, E., Docktor, M., Smillie, C., Weber, S., Preheim, S. P., Gevers, D., Giannoukos, G., Ciulla, D., Tabbaa, D., Ingram, J., Schauer, D. B., Ward, D. V., Korzenik, J. R., Xavier, R. J., Bousvaros, A., Alm, E. J. & Schauer, D. B. (2012). \emph{Non-invasive mapping of the gastrointestinal microbiota identifies children with inflammatory bowel disease}. PloS One, 7(6), e39242. <doi.org/10.1371/journal.pone.0039242>.
#'
#' Duvallet, C., Gibbons, S., Gurry, T., Irizarry, R., & Alm, E. (2017). \emph{MicrobiomeHD: the human gut microbiome in health and disease [Data set]}. Zenodo. <doi.org/10.5281/zenodo.1146764>.
"ibd_phylo"


#' Import phyloseq classes for data
#'
#' @name import_phyloseq
#' @importClassesFrom phyloseq otu_table phyloseq
#' @return No return value. Created for important phyloseq classes.
NULL