Reduce the ODE system by means of a quasi steady-state assumption

Description

Reduce the ODE system by means of a quasi steady-state assumption

Usage

1
2
quasiSteadyStates(model, fastreact, state2Remove = list(), smatrix = NULL,
  states = NULL, rates = NULL, outputFormat = "R")

Arguments

model

Either name of the csv-file or the eqnlist of the model. If NULL, specify smatrix, states and rates by hand.

fastreact

Character vector, list of flux parameters corresponding to the fast fluxes used for quasi steady-state approximation. The ratio between participating fluxes is introduced as a new free parameter.

state2Remove

Character, name of state that is expressed by the other states during the simplification

smatrix

Numeric matrix, stiochiometry matrix of the system

states

Character vector, state vector of the system

rates

Character vector, flux vector of the system

outputFormat

Define the output format. By default "R" generating dMod compatible output. To obtain an output appropriate for d2d [1] "M" must be selected (Not yet provided).

Value

Equation List with reduced model.

Author(s)

Marcus Rosenblatt, marcus.rosenblatt@fdm.uni-freiburg.de

References

[1] https://bitbucket.org/d2d-development/d2d-software/wiki/Home

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