Nothing
context("rng")
source(system.file("common", "friedmanData.R", package = "dbarts"), local = TRUE)
test_that("rng cooperates with native generator", {
n.trees <- 5L
oldSeed <- if (exists(".Random.seed")) .Random.seed else { runif(1L); .Random.seed }
control <- dbartsControl(verbose = FALSE, n.trees = n.trees, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngKind = "default", rngNormalKind = "default")
sampler <- dbarts(y ~ x, testData, control = control)
invisible(sampler$run(0L, 5L))
expect_true(any(.Random.seed != oldSeed))
oldSeed <- .Random.seed
control <- dbartsControl(verbose = FALSE, n.trees = n.trees, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngKind = "Mersenne-Twister", rngNormalKind = "Inversion")
sampler <- dbarts(y ~ x, testData, control = control)
invisible(sampler$run(0L, 5L))
expect_equal(.Random.seed, oldSeed)
## run once for 10 iterations
control <- dbartsControl(verbose = FALSE, n.trees = n.trees, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngKind = "Mersenne-Twister", rngNormalKind = "Inversion", )
sampler <- dbarts(y ~ x, testData, control = control)
sampler$storeState()
origSeed <- .Call(dbarts:::C_dbarts_deepCopy, sampler$state[[1L]]@rng.state)
invisible(sampler$run(0L, 10L, TRUE))
oldSeed <- sampler$state[[1L]]@rng.state
## run twice for 5 iterations, writing out state and restoring from that
sampler <- dbarts(y ~ x, testData, control = control)
sampler$storeState()
tempState <- sampler$state
tempState[[1L]]@rng.state <- .Call(dbarts:::C_dbarts_deepCopy, origSeed)
sampler$setState(tempState)
invisible(sampler$run(0L, 5L, TRUE))
tempState <- sampler$state
sampler <- dbarts(y ~ x, testData, control = control)
sampler$setState(tempState)
invisible(sampler$run(0L, 5L, TRUE))
expect_equal(sampler$state[[1L]]@rng.state, oldSeed)
})
test_that("rng with fixed seed matches native, one chain, one thread", {
set.seed(1234, kind = "Mersenne-Twister", normal.kind = "Inversion")
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 1L, n.threads = 1L,
updateState = FALSE)
sampler <- dbarts(y ~ x, testData, control = control)
builtInResults <- sampler$run(0L, 5L)
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngSeed = 1234)
sampler <- dbarts(y ~ x, testData, control = control)
seedOnlyResults <- sampler$run(0L, 5L)
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngKind = "Mersenne-Twister", rngNormalKind = "Inversion",
rngSeed = 1234)
sampler <- dbarts(y ~ x, testData, control = control)
allRngResults <- sampler$run(0L, 5L)
expect_equal(builtInResults$train, seedOnlyResults$train)
expect_equal(builtInResults$train, allRngResults$train)
})
test_that("rng with fixed seed matches native, two chains, one threads", {
set.seed(1234, kind = "Mersenne-Twister", normal.kind = "Inversion")
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 2L, n.threads = 1L,
updateState = FALSE)
sampler <- dbarts(y ~ x, testData, control = control)
builtInResults <- sampler$run(0L, 5L)
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngSeed = 1234)
sampler <- dbarts(y ~ x, testData, control = control)
sequentialResults_1 <- sampler$run(0L, 5L)
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 1L, n.threads = 1L,
updateState = FALSE)
sampler <- dbarts(y ~ x, testData, control = control)
sequentialResults_2 <- sampler$run(0L, 5L)
expect_equal(as.vector(builtInResults$train),
c(sequentialResults_1$train, sequentialResults_2$train))
})
test_that("rng with fixed seed matches native, two chains, one threads", {
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 2L, n.threads = 2L,
updateState = FALSE,
rngSeed = 1234)
sampler <- dbarts(y ~ x, testData, control = control)
seedOnlyResults <- sampler$run(0L, 5L)
set.seed(1234, kind = "Mersenne-Twister", normal.kind = "Inversion")
seed_1 <- runif(1)
seed_2 <- runif(1)
to_unsigned_int <- function(unif) {
unif <- unif * (.Machine$integer.max + 0.5)
msb <- floor(unif)
one <- unif - msb
bitwShiftL(msb, 1) + 1 * (unif - msb >= 0.5)
}
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngKind = "Mersenne-Twister", rngNormalKind = "Inversion",
rngSeed = to_unsigned_int(seed_1))
sampler <- dbarts(y ~ x, testData, control = control)
sequentialResults_1 <- sampler$run(0L, 5L)
control <- dbartsControl(verbose = FALSE, n.trees = 5L, n.chains = 1L, n.threads = 1L,
updateState = FALSE,
rngKind = "Mersenne-Twister", rngNormalKind = "Inversion",
rngSeed = to_unsigned_int(seed_2))
sampler <- dbarts(y ~ x, testData, control = control)
sequentialResults_2 <- sampler$run(0L, 5L)
expect_equal(as.vector(seedOnlyResults$train),
c(sequentialResults_1$train, sequentialResults_2$train))
})
test_that("bart with fixed seed is reproducible", {
fit1 <- bart(y ~ x, testData, ntree = 5, nskip = 0, ndpost = 3, seed = 12345L,
verbose = FALSE,
nchain = 2L, nthread = 1L)
fit2 <- bart(y ~ x, testData, ntree = 5, nskip = 0, ndpost = 3, seed = 12345L,
verbose = FALSE,
nchain = 2L, nthread = 1L)
expect_equal(fit1$yhat.train, fit2$yhat.train)
fit3 <- bart(y ~ x, testData, ntree = 5, nskip = 0, ndpost = 3, seed = 12345L,
verbose = FALSE,
nchain = 2L, nthread = 2L)
fit4 <- bart(y ~ x, testData, ntree = 5, nskip = 0, ndpost = 3, seed = 12345L,
verbose = FALSE,
nchain = 2L, nthread = 2L)
expect_equal(fit3$yhat.train, fit4$yhat.train)
expect_true(any(fit1$yhat.train != fit3$yhat.train))
})
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