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# file dna/R/AllGetResults.R
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 or 3 of the License
# (at your option).
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# A copy of the GNU General Public License is available at
# http://www.r-project.org/Licenses/
#
setMethod("get.results","resultsClassTest",function(object)
{
p.val=slot(object,"p.value")
delta=slot(object,"delta")
genelist=slot(object,"class.genes")
return(list(p.value=p.val,delta=delta,class.genes=genelist))
})
setMethod("get.results","resultsIndTest",function(object)
{
p.val=slot(object,"p.values")
test.stat=slot(object,"d")
gene.names=names(p.val)
p=length(p.val)
out=data.frame(d=test.stat,p.value=p.val)
return(data.frame(out[order(p.val),]))
})
setMethod("get.results","resultsModTest",function(object)
{
p.val=slot(object,"p.value")
N=slot(object,"N")
mod1=slot(object,"modules1")
mod2=slot(object,"modules2")
return(list(p.value=p.val,N=N,modules1=mod1,modules2=mod2))
})
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