tests/testthat/_snaps/compute_residuals.md

residual computation works

Code
  x
Output
  fHMM fitted model:
  * total estimation time: 7 mins 
  * accepted runs: 21 of 100 
  * log-likelihood: 16913.33
Code
  unclass(x)
Output
  $data
  fHMM empirical data

  $estimate
   [1] -3.803204e+00 -1.326933e+01 -3.607245e+00 -4.033628e+00 -1.817385e+01
   [6] -5.242330e+00  1.268712e-03 -2.517499e-04 -1.673649e-03 -5.154331e+00
  [11] -4.324663e+00 -3.664139e+00  1.662440e+00  1.123751e+01  2.364721e+00
  attr(,"class")
  [1] "parUncon"

  $nlm_output
  $nlm_output$minimum
  [1] -16913.33

  $nlm_output$estimate
   [1] -3.803204e+00 -1.326933e+01 -3.607245e+00 -4.033628e+00 -1.817385e+01
   [6] -5.242330e+00  1.268712e-03 -2.517499e-04 -1.673649e-03 -5.154331e+00
  [11] -4.324663e+00 -3.664139e+00  1.662440e+00  1.123751e+01  2.364721e+00
  attr(,"class")
  [1] "parUncon"

  $nlm_output$gradient
   [1]  8.025508e-04  2.311206e-04  5.133367e-04  1.821863e-04 -5.404767e-06
   [6]  9.292154e-04 -3.669067e-02 -8.826900e-02 -4.071918e-02 -4.058408e-04
  [11] -3.325656e-04  7.917956e-05  6.224852e-05  7.080093e-04 -1.676898e-04

  $nlm_output$code
  [1] 1

  $nlm_output$iterations
  [1] 195


  $estimation_time
  Time difference of 7 mins

  $ll
  [1] 16913.33

  $lls
    [1]       NA       NA       NA       NA       NA       NA       NA       NA
    [9] 16779.09       NA       NA 16721.22       NA       NA       NA       NA
   [17] 16765.00       NA       NA       NA       NA       NA 16768.55       NA
   [25]       NA       NA       NA       NA       NA       NA 16778.30       NA
   [33]       NA       NA 16681.98       NA 16882.17       NA       NA       NA
   [41]       NA       NA 16727.32 16333.85       NA       NA       NA       NA
   [49]       NA       NA       NA 16913.33       NA       NA       NA       NA
   [57] 16866.91       NA 16883.69       NA 16882.17       NA       NA 16766.85
   [65] 16777.51       NA       NA       NA       NA       NA       NA       NA
   [73]       NA       NA       NA       NA 16907.05 16779.64       NA       NA
   [81] 16858.30       NA 16889.05       NA       NA       NA       NA       NA
   [89]       NA       NA       NA       NA       NA 16777.79 16765.09       NA
   [97]       NA       NA       NA       NA

  $gradient
   [1]  8.025508e-04  2.311206e-04  5.133367e-04  1.821863e-04 -5.404767e-06
   [6]  9.292154e-04 -3.669067e-02 -8.826900e-02 -4.071918e-02 -4.058408e-04
  [11] -3.325656e-04  7.917956e-05  6.224852e-05  7.080093e-04 -1.676898e-04

  $hessian
                 [,1]          [,2]          [,3]          [,4]          [,5]
   [1,]  3.125078e+01  5.046143e-04 -1.890236e+01  2.365051e-01 -6.842377e-05
   [2,]  5.046143e-04  3.574442e-04 -3.648185e-04  5.777424e-04  0.000000e+00
   [3,] -1.890236e+01 -3.648185e-04  3.412937e+01 -7.818377e-02  3.845660e-03
   [4,]  2.365051e-01  5.777424e-04 -7.818377e-02  1.038610e+01 -6.947770e-05
   [5,] -6.842377e-05  0.000000e+00  3.845660e-03 -6.947770e-05  8.018584e-04
   [6,] -1.325373e+00 -5.020628e-04  5.113849e-01 -2.485041e+00 -3.818466e-06
   [7,] -1.572155e+03 -2.377064e-01 -2.365195e+03 -3.127908e+00 -7.888968e-02
   [8,]  1.684756e+03 -2.831492e+00  2.243383e+02 -1.483185e+02 -1.033683e+00
   [9,] -5.275310e+01 -9.828746e-02  4.218114e-01  4.936231e+01 -7.176294e-02
  [10,] -1.272938e+01  4.787198e-05  8.578854e+01  6.167572e-01 -3.106926e-05
  [11,] -6.249361e+01  7.429961e-03  1.886157e+01  7.558094e+00 -7.405953e-05
  [12,]  1.059401e+01  4.639070e-04 -1.298008e+00 -6.616128e+00  4.370501e-05
  [13,]  2.208359e+00 -2.968505e-04 -1.510742e+01 -2.611708e-01 -1.204113e-05
  [14,]  5.958523e-05 -9.758907e-06 -3.051360e-04 -2.488032e-04 -3.562651e-06
  [15,] -6.531644e-01 -3.130365e-04  6.951720e-02  2.427250e-01 -1.693025e-04
                 [,6]          [,7]          [,8]          [,9]         [,10]
   [1,] -1.325373e+00 -1.572155e+03  1.684756e+03 -5.275310e+01 -1.272938e+01
   [2,] -5.020628e-04 -2.377064e-01 -2.831492e+00 -9.828746e-02  4.787198e-05
   [3,]  5.113849e-01 -2.365195e+03  2.243383e+02  4.218114e-01  8.578854e+01
   [4,] -2.485041e+00 -3.127908e+00 -1.483185e+02  4.936231e+01  6.167572e-01
   [5,] -3.818466e-06 -7.888968e-02 -1.033683e+00 -7.176294e-02 -3.106926e-05
   [6,]  1.079528e+01  9.309628e+01  2.728989e+01 -1.318556e+01 -9.597296e+00
   [7,]  9.309628e+01  4.235264e+07  2.147036e+06  2.227287e+03  1.477753e+04
   [8,]  2.728989e+01  2.147036e+06  1.353523e+07  1.890910e+05  1.012190e+04
   [9,] -1.318556e+01  2.227287e+03  1.890910e+05  9.236838e+05  4.436488e+01
  [10,] -9.597296e+00  1.477753e+04  1.012190e+04  4.436488e+01  1.298722e+03
  [11,]  2.005423e+01  1.085045e+04  1.289878e+04  2.294430e+03 -7.099240e+02
  [12,]  7.125532e+00 -1.014998e+02  4.992898e+02  1.273608e+03 -5.720563e+00
  [13,]  1.479393e+00 -2.952943e+03 -1.610722e+03 -2.811179e+01 -1.925048e+02
  [14,] -5.372607e-04  1.786180e-01  3.857822e-01  3.868618e-02  6.312247e-03
  [15,] -6.003408e-01  5.820475e+00 -1.161087e+01 -2.399145e+01  3.583491e-01
                [,11]         [,12]         [,13]         [,14]         [,15]
   [1,] -6.249361e+01  1.059401e+01  2.208359e+00  5.958523e-05 -6.531644e-01
   [2,]  7.429961e-03  4.639070e-04 -2.968505e-04 -9.758907e-06 -3.130365e-04
   [3,]  1.886157e+01 -1.298008e+00 -1.510742e+01 -3.051360e-04  6.951720e-02
   [4,]  7.558094e+00 -6.616128e+00 -2.611708e-01 -2.488032e-04  2.427250e-01
   [5,] -7.405953e-05  4.370501e-05 -1.204113e-05 -3.562651e-06 -1.693025e-04
   [6,]  2.005423e+01  7.125532e+00  1.479393e+00 -5.372607e-04 -6.003408e-01
   [7,]  1.085045e+04 -1.014998e+02 -2.952943e+03  1.786180e-01  5.820475e+00
   [8,]  1.289878e+04  4.992898e+02 -1.610722e+03  3.857822e-01 -1.161087e+01
   [9,]  2.294430e+03  1.273608e+03 -2.811179e+01  3.868618e-02 -2.399145e+01
  [10,] -7.099240e+02 -5.720563e+00 -1.925048e+02  6.312247e-03  3.583491e-01
  [11,]  3.005385e+03 -4.040755e+02  8.440253e+01 -4.097724e-02  2.897225e+01
  [12,] -4.040755e+02  8.577721e+02  1.877276e+00  6.767792e-03 -8.133544e+01
  [13,]  8.440253e+01  1.877276e+00  7.620995e+01 -5.842054e-05 -1.411251e-01
  [14,] -4.097724e-02  6.767792e-03 -5.842054e-05 -6.510714e-04 -5.065379e-04
  [15,]  2.897225e+01 -8.133544e+01 -1.411251e-01 -5.065379e-04  1.660721e+01

  $decoding
     [1] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2
    [38] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
    [75] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [112] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [149] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [186] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [223] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [260] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [297] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2
   [334] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [371] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [408] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3
   [445] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
   [482] 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [519] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [556] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [593] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [630] 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
   [667] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
   [704] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
   [741] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
   [778] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
   [815] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
   [852] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2
   [889] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [926] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
   [963] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1000] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1
  [1037] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1074] 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1111] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1148] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1185] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1222] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1259] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1296] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1333] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1370] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1407] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1444] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1481] 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1518] 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1555] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1592] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1629] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1666] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1703] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1740] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1777] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1814] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [1851] 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1
  [1888] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2
  [1925] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1962] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [1999] 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [2036] 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2073] 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2110] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2147] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2184] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2221] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3
  [2258] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [2295] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [2332] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [2369] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [2406] 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2443] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2480] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2517] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2554] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2591] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1
  [2628] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2
  [2665] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2702] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2739] 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [2776] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2
  [2813] 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [2850] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2887] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2924] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [2961] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3
  [2998] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [3035] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [3072] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3109] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3146] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3183] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3220] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1
  [3257] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3294] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3331] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3368] 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3405] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3442] 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1
  [3479] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3516] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3553] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3590] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3627] 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3664] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3701] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2
  [3738] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1
  [3775] 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3812] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3849] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [3886] 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3923] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3960] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [3997] 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2
  [4034] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [4071] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [4108] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [4145] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [4182] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [4219] 2 2 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4256] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4293] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4330] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4367] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4404] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4441] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4478] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4515] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4552] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4589] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4626] 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [4663] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4700] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4737] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4774] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2
  [4811] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [4848] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4885] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4922] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2
  [4959] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [4996] 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1
  [5033] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [5070] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [5107] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2
  [5144] 2 2 2 2 2 2 2 2 2 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [5181] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3 3
  [5218] 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [5255] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [5292] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [5329] 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2
  [5366] 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1
  [5403] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [5440] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [5477] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [5514] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [5551] 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1
  [5588] 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2
  [5625] 2

  $residuals
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  [5376] -0.5902991878 -0.0438868000  0.0984498673  0.2840314662 -1.0740980044
  [5381]  0.3504072723 -0.1627915133  0.5980898967 -0.0607908392 -0.1588165504
  [5386] -1.2438649349  1.2656746284 -1.3578046616  0.2707745653 -1.2803474707
  [5391]  1.0752760089  1.1918137752  0.9206476190  1.1930331309 -0.2507430926
  [5396] -0.1718449208 -0.7534341729 -1.0748908338  1.0102193106 -0.1039211173
  [5401]  0.4837603472 -0.7166724595 -1.7382999836 -0.4697880890  0.9972302045
  [5406] -0.7021915536 -1.1415613690  1.0482233110 -1.2495480372 -1.2214035433
  [5411]  1.9980341700  0.1081080255  0.2621872959 -0.4820057652 -1.5848326514
  [5416]  3.0267133626  0.4398639715  0.9161490654  0.1210619774 -0.9285595160
  [5421] -0.6618435292  0.8525636907  0.2320979347  1.5789073502 -1.6751209053
  [5426]  0.1986362386 -0.1552046003 -0.7685344522 -0.0855620850  1.1445257119
  [5431]  0.5503701518  1.6478635695 -0.2120851903  0.8430916084  0.9013876068
  [5436] -0.5936125050  0.0766349442  0.1320235413 -0.4138510279  0.0004841880
  [5441] -0.4775736339  0.2900017744  1.7031529489 -1.1141536122 -2.1631998606
  [5446]  0.5077377227  1.0726102609 -0.6377047147 -0.0289194908 -0.7007628486
  [5451]  0.2537825836 -1.5119628158 -0.4056650344  0.8517334433 -2.7975037301
  [5456]  2.3737882866  0.0728366640  1.6981204755 -0.2010298835 -2.3734043221
  [5461]  0.1228976017  0.3270577426  1.7931466419 -0.4204312610 -0.3157422453
  [5466] -2.3377691421  2.0468915523  0.5049853434  0.0852562551 -0.3607583258
  [5471] -0.6652562404  0.9541138222 -1.1767335613  1.2442630778  0.1648864733
  [5476]  0.1072576159  0.4218173017 -0.3728166685 -0.5848243948 -0.8107839973
  [5481] -0.3132296739  1.0229680626 -0.4127452106  0.3756151413 -0.4053042091
  [5486] -0.0298824298 -2.3404263788  1.3162246390  0.1402405901 -1.7869074786
  [5491]  1.1268882832 -0.0111296849 -0.7571574077  1.1504777228 -1.6432110687
  [5496]  0.5538362884  0.2785574127 -0.0842083010 -1.5807844931  1.5144264906
  [5501] -2.3069252761  2.0769504484  0.8362805158 -0.2181678621 -0.2159771470
  [5506] -1.6345348906 -1.0875101271 -2.8642340791  0.6784605840  1.7192530807
  [5511]  0.7511717728  1.3071427142 -0.7212372775 -1.1799178324  0.3329652127
  [5516]  0.5251060804 -1.1461042307  0.0488870590 -0.3522588329  1.1559106985
  [5521]  0.3405802742 -0.0336179670 -0.3750886588  0.0556327021  0.3669683230
  [5526]  0.9095200347  0.2033660100 -0.7251728130 -0.2480326780  0.2457530695
  [5531] -1.8905493047  0.2316917980  0.2565426373  0.3403926607 -0.6643257206
  [5536] -0.8740545677  0.3941803382  0.1603730542 -0.7328809957 -0.3206127617
  [5541] -0.0395125357 -0.8029124986  1.2546945351 -1.0696088542 -2.0904951089
  [5546] -0.0734276207 -0.3485481164  0.7362112561  0.0172018820 -1.2347895840
  [5551]  0.1679338599 -0.7648658904 -1.7478394281  1.0919858799  0.7936806321
  [5556]  0.6845773801 -0.5248088632  0.2236414205 -1.5756224517  0.5949841257
  [5561] -0.4968790218 -0.4987862988 -0.5808936412  0.8083296031 -1.0885621345
  [5566]  1.4063183672 -0.6785395483 -0.2843770308 -0.7560427738  0.8698958904
  [5571]  1.7643782249  1.0539159400 -1.2919431918  0.2307441941 -0.1340019752
  [5576] -0.7263688062  0.5327625006  0.3842744902  1.3251575236 -0.7276303536
  [5581] -0.3078390573 -0.2879641472  0.9740446189  1.2301271484 -0.1521617065
  [5586]  0.5033964143  0.0448677725 -0.2890600842 -0.2708727000  0.0719345912
  [5591] -0.0525570993 -0.0970086806  0.3474471825  0.7776473936 -0.1760766324
  [5596] -0.5021794989 -0.8116301447 -0.6486625105 -1.7429558815 -0.7921433059
  [5601]  0.2013887321 -3.1843888665  0.1368629256 -0.8797335601  1.8600434082
  [5606] -1.0110707975 -0.4433104779  1.0615245464  2.1169165686 -0.5893634362
  [5611] -0.2116561676 -0.0580638340  0.0113297375 -0.7985382083  0.1303368793
  [5616]  0.7962086437 -0.4885399020 -1.4147631946  1.0419301537  0.7297619711
  [5621]  0.8037735790  0.3965326719  0.6292976535 -0.5102112176  0.1742536702
  attr(,"class")
  [1] "fHMM_residuals"


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fHMM documentation built on July 7, 2022, 5:04 p.m.