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R/Fisheyer_Methods.r
In fisheyeR: Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
# PACKAGE fisheyeR
# Methods
require(methods)
setGeneric("POIcalculate<-" , function(object, value){standardGeneric ("POIcalculate<-")})
setReplaceMethod( f ="POIcalculate",
signature = 'POI',
definition = function(object, value){
object@matrizSim <- value$XhihatQ
object@cos.query.docs <- value$cos.query.docs
object@wordsInQuery <- value$wordsInQuery
object@docs <- value$docs
return(object)
}
)
setReplaceMethod( f ="POIcalculate",
signature = 'multiPOI',
definition = function(object, value){
object@matrizSim <- value$XhihatQ
object@cos.query.docs <- value$cos.query.docs
object@wordsInQuery <- value$wordsInQuery
object@docs <- value$docs
object@wordsInQueryFull <- value$wordsInQueryFull
return(object)
}
)
setGeneric("POIcolors<-" , function(object, value){standardGeneric ("POIcolors<-")})
setReplaceMethod( f ="POIcolors",
signature = 'POI',
definition = function(object, value){
object@colores <- value
return(object)
}
)
setGeneric("query2Cols" ,
function(object, value){standardGeneric ("query2Cols")})
setMethod("query2Cols" ,
signature = "POI",
function(object, value){
cosquery = object@cos.query.docs
paleta = value
cosquery[cosquery < 0] <- 0
cosquery[cosquery > 1] <- 1
z <- 100 * matrix(cosquery)
x <- 1:nrow(z)
y <- 1:ncol(z)
zlim <- c(0,100)
zlen <- round(zlim[2] - zlim[1])
if (paleta == 'heat'){
colorlut <- heat.colors(zlen)
}
if (paleta == 'topo'){
colorlut <- topo.colors(zlen)
}
if (paleta == 'cm'){
colorlut <- cm.colors(zlen)
}
if (paleta == 'terrain'){
colorlut <- terrain.colors(zlen)
}
z[z < 1] <- 1
col <- colorlut[ z-zlim[1] ]
return(col)
}
)
setGeneric("POIcoords<-" , function(object, value){standardGeneric ("POIcoords<-")})
setReplaceMethod( f ="POIcoords",
signature = 'POI',
definition = function(object, value){
object@Pcoords <- value$Pcoords
object@PcoordsFI <- value$PcoordsFI
object@newPcoords <- value$newPcoords
object@objeto <- value$objeto
return(object)
}
)
setGeneric("POICalc" ,
function(objeto, NC, cx=0, cy=0, r=1, ...){standardGeneric ("POICalc")})
setMethod("POICalc" ,
signature = "POI",
function(objeto, NC, cx=0, cy=0, r=1, ...){
MatrizSim = objeto@matrizSim
secuencia = seq(2/NC,2,2/NC)
Pcoords = matrix(rep(0,NC*2),nc=2)
n = 1
for (i in secuencia){
Pcoords[n,] = c(r * cos(i*pi), r * sin(i*pi))
n = n+1
}
PcoordsFI = matrix(toPolar(Pcoords[,1],Pcoords[,2]),nc=2)
PcoordsFI[,2] = PcoordsFI[,2]+.15
PcoordsFI = matrix(toCartesian(PcoordsFI[,1],PcoordsFI[,2]),nc=2)
if (nrow(Pcoords) != 1){
newPcoords = puntosMedios(Pcoords)
} else {
newPcoords = Pcoords
}
MatrizSim[is.nan(MatrizSim/rowSums(MatrizSim))] <- 0
W = MatrizSim / rowSums(MatrizSim)
W[is.nan(W)] <- 0
nwords = nrow(W)
objeto = matrix(rep(0,2*nwords),nc=2)
for (j in 1:nwords){
for (nPOI in 1:NC){
objeto[j,1] = objeto[j,1]+(W[j,nPOI]*Pcoords[nPOI,1])
objeto[j,2] = objeto[j,2]+(W[j,nPOI]*Pcoords[nPOI,2])
}
}
objeto = addNoise(objeto)
return(list(Pcoords = Pcoords,
PcoordsFI = PcoordsFI,
newPcoords = newPcoords,
objeto = objeto))
}
)
setGeneric("POIPlot" ,
function(POI){standardGeneric ("POIPlot")})
setMethod("POIPlot" ,
signature = "POI",
function(POI){
par(bg=POI@plotCol, mar = c(0.1,0.1,0.1,0.1), family = POI@itemsFamily)
if (exists('POI.env')) {
if (exists('POI', envir = POI.env)) {
POI <- get('POI', envir = POI.env)
}
}
clustered = POI@clustered
selected = POI@selected
objeto = POI@objeto
newcoords = POI@newcoords
newcoords_1 = POI@newcoords_1
NC = length(POI@wordsInQuery)
cx=0
cy=0
r=1
etiq2 = POI@docs[,1]
etiq = POI@wordsInQuery
fishEYE = TRUE
M = POI@M
poisTextCol = POI@poisTextCol
colores = POI@colores[as.numeric(POI@docs[,2])]
poisCircleCol = POI@poisCircleCol
linesCol = POI@linesCol
itemsCol = POI@itemsCol
circleCol = POI@circleCol
LABELS = POI@LABELS
Pcoords = POI@Pcoords
newPcoords = POI@newPcoords
cgnsphrFont = POI@cgnsphrFont
newcoords_par = newcoords
newcoords_Pcoords = matrix(rep( c(newcoords,newcoords_1 ),
nrow(Pcoords)),nc=2,byrow=TRUE)
newcoords_puntosMediosPcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(newPcoords)),nc=2,byrow=TRUE)
newcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(objeto)),nc=2,byrow=TRUE)
objeto = objeto+newcoords
objetoH = toHiperbolico(objeto, M)
objetoC = objetoH$objetoC
objetoP = objetoH$objetoP
Pcoords = Pcoords + newcoords_Pcoords
PcoordsH = toHiperbolico(Pcoords, M)
PcoordsC = PcoordsH$objetoC
PcoordsP = PcoordsH$objetoP
newPcoords = newPcoords + newcoords_puntosMediosPcoords
newPcoordsH = toHiperbolico(newPcoords, M)
Pcoords_objetoC = newPcoordsH$objetoC
if (LABELS) {
PcoordsFI = matrix(toPolar(PcoordsC[,1],PcoordsC[,2]),nc=2)
PcoordsFI[,2] = 1 +.15
PcoordsFI = matrix(toCartesian(PcoordsFI[,1],PcoordsFI[,2]),nc=2)
}
if (clustered == TRUE) {
objetoC.bk <- objetoC
newobject <- H1WavoidCluttering(objetoC, 2)
objetoC <- newobject$newobjeto
etiq2 <- etiq2[newobject$uniques]
if (sum(is.na(itemsCol[newobject$uniques])) == 0) {
itemsCol <- itemsCol[newobject$uniques]
}
colores <- colores[newobject$uniques]
objetoP <- matrix(objetoP[newobject$uniques,], nc = 2)
pchs = newobject$uniques %in% which(newobject$clusters == 0)
pchs[pchs > 0] <- 19
pchs[pchs == 0] <- 23
Pminus = (newobject$uniques %in% which(newobject$clusters != 0))/2
} else {
Pminus = 0
pchs <- 19
}
plot(circulo(0,0,1, circleCol, PLOT = FALSE),cex=.5,ylim=c(-1.15,1.15),xlim=c(-1.15,1.15),
ann=FALSE, axes=F,type='l', col = circleCol)
points(objetoC,
pch = pchs, col = colores, bg = colores, cex = 1.5 - (objetoP[,2] - Pminus) )
text(objetoC[,1], objetoC[,2], labels = etiq2, cex = cgnsphrFont - objetoP[,2],
pos = 3, col = itemsCol)
abline(h = cx, col = 'grey', lty = 'dashed')
abline(v = cy, col = 'grey', lty = 'dashed')
points(PcoordsC, cex = 2, col = poisCircleCol)
lines(Pcoords_objetoC, col = linesCol)
segments(Pcoords_objetoC[nrow(Pcoords_objetoC),1],Pcoords_objetoC[nrow(Pcoords_objetoC),2],
Pcoords_objetoC[1,1],Pcoords_objetoC[1,2], col = linesCol)
if (LABELS) {
text(PcoordsFI[,1],PcoordsFI[,2],toupper(etiq),cex=.75, col = poisTextCol)
}
if (clustered == TRUE) {
objetoC <- objetoC.bk
}
if (selected != 1) {
circulin(0,0, POI@circRadio, objeto = objetoC)
}
if (!exists('POI.env')){
POI.env <<- new.env()
}
poiCOPY = POI
poiCOPY@objeto <- objeto
poiCOPY@objetoC <- objetoC
poiCOPY@newPcoords <- newPcoords
poiCOPY@Pcoords <- Pcoords
assign('POI',poiCOPY , envir = POI.env)
}
)
setMethod("POIPlot" ,
signature = "multiPOI",
function(POI){
par(bg=POI@plotCol, mar = c(0.1,0.1,0.1,0.1), family = POI@itemsFamily)
if (exists('POI.env')) {
if (exists('POI', envir = POI.env)) {
POI <- get('POI', envir = POI.env)
}
}
clustered = POI@clustered
selected = POI@selected
objeto = POI@objeto
newcoords = POI@newcoords
newcoords_1 = POI@newcoords_1
NC = length(POI@wordsInQuery)
cx=0
cy=0
r=1
etiq2 = POI@docs[,1]
etiq = POI@wordsInQuery
fishEYE = TRUE
M = POI@M
poisTextCol = POI@poisTextCol
if (class(POI) == 'mPOIAnd') {
colores = POI@colores[as.numeric(POI@docs[,2])]
} else {
colores = POI@colores
}
poisCircleCol = POI@poisCircleCol
linesCol = POI@linesCol
itemsCol = POI@itemsCol
circleCol = POI@circleCol
LABELS = POI@LABELS
Pcoords = POI@Pcoords
newPcoords = POI@newPcoords
cgnsphrFont = POI@cgnsphrFont
newcoords_par = newcoords
newcoords_Pcoords = matrix(rep( c(newcoords,newcoords_1 ),
nrow(Pcoords)),nc=2,byrow=TRUE)
newcoords_puntosMediosPcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(newPcoords)),nc=2,byrow=TRUE)
newcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(objeto)),nc=2,byrow=TRUE)
objeto = objeto+newcoords
objetoH = toHiperbolico(objeto, M)
objetoC = objetoH$objetoC
objetoP = objetoH$objetoP
Pcoords = Pcoords + newcoords_Pcoords
PcoordsH = toHiperbolico(Pcoords, M)
PcoordsC = PcoordsH$objetoC
PcoordsP = PcoordsH$objetoP
newPcoords = newPcoords + newcoords_puntosMediosPcoords
newPcoordsH = toHiperbolico(newPcoords, M)
Pcoords_objetoC = newPcoordsH$objetoC
if (LABELS) {
PcoordsFI = matrix(toPolar(PcoordsC[,1],PcoordsC[,2]),nc=2)
PcoordsFI[,2] = 1 +.15
PcoordsFI = matrix(toCartesian(PcoordsFI[,1],PcoordsFI[,2]),nc=2)
}
if (clustered == TRUE) {
objetoC.bk <- objetoC
newobject <- H1WavoidCluttering(objetoC, 2)
objetoC <- newobject$newobjeto
etiq2 <- etiq2[newobject$uniques]
if (sum(is.na(itemsCol[newobject$uniques])) == 0) {
itemsCol <- itemsCol[newobject$uniques]
}
colores <- colores[newobject$uniques]
objetoP <- matrix(objetoP[newobject$uniques,], nc = 2)
pchs = newobject$uniques %in% which(newobject$clusters == 0)
pchs[pchs > 0] <- 19
pchs[pchs == 0] <- 23
Pminus = (newobject$uniques %in% which(newobject$clusters != 0))/2
} else {
Pminus = 0
pchs <- 19
}
plot(circulo(0,0,1, circleCol, PLOT = FALSE),cex=.5,ylim=c(-1.15,1.15),xlim=c(-1.15,1.15),
ann=FALSE, axes=F,type='l', col = circleCol)
points(objetoC, pch = pchs, bg = colores, col = colores, cex = 1.5 - (objetoP[,2] - Pminus) )
text(objetoC[,1], objetoC[,2], labels = etiq2, cex = cgnsphrFont - objetoP[,2],
pos = 3, col = itemsCol)
abline(h = cx, col = 'grey', lty = 'dashed')
abline(v = cy, col = 'grey', lty = 'dashed')
points(PcoordsC,cex = 2, col = poisCircleCol)
lines(Pcoords_objetoC, col = linesCol)
segments(Pcoords_objetoC[nrow(Pcoords_objetoC),1],Pcoords_objetoC[nrow(Pcoords_objetoC),2],
Pcoords_objetoC[1,1],Pcoords_objetoC[1,2], col = linesCol)
if (LABELS) {
text(PcoordsFI[,1],PcoordsFI[,2],toupper(etiq),cex=.75, col = poisTextCol)
}
if (clustered == TRUE) {
objetoC <- objetoC.bk
}
if (selected != 1) {
circulin(0,0, POI@circRadio, objeto = objetoC)
}
if (!exists('POI.env')){
POI.env <<- new.env()
}
poiCOPY = POI
poiCOPY@objeto <- objeto
poiCOPY@objetoC <- objetoC
poiCOPY@newPcoords <- newPcoords
poiCOPY@Pcoords <- Pcoords
assign('POI',poiCOPY , envir = POI.env)
}
)
setMethod("POIPlot" ,
signature = "POIGraph",
function(POI){
par(bg=POI@plotCol, mar = c(0.1,0.1,0.1,0.1), family = POI@itemsFamily)
if (exists('POI.env')) {
if (exists('POI', envir = POI.env)) {
POI <- get('POI', envir = POI.env)
}
}
selected = POI@selected
objeto = POI@objeto
newcoords = POI@newcoords
newcoords_1 = POI@newcoords_1
NC = length(POI@wordsInQuery)
cx=0
cy=0
r=1
if(length(POI@docs) == 0) {
etiq2 <- matrix(seq(1:nrow(objeto)))
} else {
etiq2 = POI@docs[,1]
}
fishEYE = TRUE
M = POI@M
poisTextCol = POI@poisTextCol
colores = POI@colores[as.numeric(POI@docs[,2])]
poisCircleCol = POI@poisCircleCol
linesCol = POI@linesCol
itemsCol = POI@itemsCol
circleCol = POI@circleCol
LABELS = POI@LABELS
Pcoords = POI@Pcoords
newPcoords = POI@newPcoords
cgnsphrFont = POI@cgnsphrFont
EDGES = POI@EDGES
newcoords_par = newcoords
newcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(objeto)),nc=2,byrow=TRUE)
objeto = objeto+newcoords
objetoH = toHiperbolico(objeto, M)
objetoC = objetoH$objetoC
objetoP = objetoH$objetoP
plot(circulo(0,0,1, circleCol, PLOT = FALSE),cex=.5,ylim=c(-1.15,1.15),xlim=c(-1.15,1.15),
ann=FALSE, axes=F,type='l', col = circleCol)
points(objetoC, pch=19, col = colores, cex = 1.5 - objetoP[,2])
if (length(EDGES) != 0) {
EDGES.lines = cbind(objetoC[ EDGES[ ,1] ,], objetoC[ EDGES[ ,2] ,])
segments(EDGES.lines[,1], EDGES.lines[,2], EDGES.lines[,3], EDGES.lines[,4], col = 'red')
}
text(objetoC[,1], objetoC[,2], labels = etiq2, cex = cgnsphrFont - objetoP[,2],
pos = 3, col = itemsCol)
abline(h = cx, col = 'grey', lty = 'dashed')
abline(v = cy, col = 'grey', lty = 'dashed')
if (selected != 1) {
circulin(0,0, POI@circRadio, objeto = objetoC)
}
if (!exists('POI.env')){
POI.env <<- new.env()
}
poiCOPY = POI
poiCOPY@objeto <- objeto
poiCOPY@objetoC <- objetoC
assign('POI',poiCOPY , envir = POI.env)
}
)
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# PACKAGE fisheyeR
# Methods
require(methods)
setGeneric("POIcalculate<-" , function(object, value){standardGeneric ("POIcalculate<-")})
setReplaceMethod( f ="POIcalculate",
signature = 'POI',
definition = function(object, value){
object@matrizSim <- value$XhihatQ
object@cos.query.docs <- value$cos.query.docs
object@wordsInQuery <- value$wordsInQuery
object@docs <- value$docs
return(object)
}
)
setReplaceMethod( f ="POIcalculate",
signature = 'multiPOI',
definition = function(object, value){
object@matrizSim <- value$XhihatQ
object@cos.query.docs <- value$cos.query.docs
object@wordsInQuery <- value$wordsInQuery
object@docs <- value$docs
object@wordsInQueryFull <- value$wordsInQueryFull
return(object)
}
)
setGeneric("POIcolors<-" , function(object, value){standardGeneric ("POIcolors<-")})
setReplaceMethod( f ="POIcolors",
signature = 'POI',
definition = function(object, value){
object@colores <- value
return(object)
}
)
setGeneric("query2Cols" ,
function(object, value){standardGeneric ("query2Cols")})
setMethod("query2Cols" ,
signature = "POI",
function(object, value){
cosquery = object@cos.query.docs
paleta = value
cosquery[cosquery < 0] <- 0
cosquery[cosquery > 1] <- 1
z <- 100 * matrix(cosquery)
x <- 1:nrow(z)
y <- 1:ncol(z)
zlim <- c(0,100)
zlen <- round(zlim[2] - zlim[1])
if (paleta == 'heat'){
colorlut <- heat.colors(zlen)
}
if (paleta == 'topo'){
colorlut <- topo.colors(zlen)
}
if (paleta == 'cm'){
colorlut <- cm.colors(zlen)
}
if (paleta == 'terrain'){
colorlut <- terrain.colors(zlen)
}
z[z < 1] <- 1
col <- colorlut[ z-zlim[1] ]
return(col)
}
)
setGeneric("POIcoords<-" , function(object, value){standardGeneric ("POIcoords<-")})
setReplaceMethod( f ="POIcoords",
signature = 'POI',
definition = function(object, value){
object@Pcoords <- value$Pcoords
object@PcoordsFI <- value$PcoordsFI
object@newPcoords <- value$newPcoords
object@objeto <- value$objeto
return(object)
}
)
setGeneric("POICalc" ,
function(objeto, NC, cx=0, cy=0, r=1, ...){standardGeneric ("POICalc")})
setMethod("POICalc" ,
signature = "POI",
function(objeto, NC, cx=0, cy=0, r=1, ...){
MatrizSim = objeto@matrizSim
secuencia = seq(2/NC,2,2/NC)
Pcoords = matrix(rep(0,NC*2),nc=2)
n = 1
for (i in secuencia){
Pcoords[n,] = c(r * cos(i*pi), r * sin(i*pi))
n = n+1
}
PcoordsFI = matrix(toPolar(Pcoords[,1],Pcoords[,2]),nc=2)
PcoordsFI[,2] = PcoordsFI[,2]+.15
PcoordsFI = matrix(toCartesian(PcoordsFI[,1],PcoordsFI[,2]),nc=2)
if (nrow(Pcoords) != 1){
newPcoords = puntosMedios(Pcoords)
} else {
newPcoords = Pcoords
}
MatrizSim[is.nan(MatrizSim/rowSums(MatrizSim))] <- 0
W = MatrizSim / rowSums(MatrizSim)
W[is.nan(W)] <- 0
nwords = nrow(W)
objeto = matrix(rep(0,2*nwords),nc=2)
for (j in 1:nwords){
for (nPOI in 1:NC){
objeto[j,1] = objeto[j,1]+(W[j,nPOI]*Pcoords[nPOI,1])
objeto[j,2] = objeto[j,2]+(W[j,nPOI]*Pcoords[nPOI,2])
}
}
objeto = addNoise(objeto)
return(list(Pcoords = Pcoords,
PcoordsFI = PcoordsFI,
newPcoords = newPcoords,
objeto = objeto))
}
)
setGeneric("POIPlot" ,
function(POI){standardGeneric ("POIPlot")})
setMethod("POIPlot" ,
signature = "POI",
function(POI){
par(bg=POI@plotCol, mar = c(0.1,0.1,0.1,0.1), family = POI@itemsFamily)
if (exists('POI.env')) {
if (exists('POI', envir = POI.env)) {
POI <- get('POI', envir = POI.env)
}
}
clustered = POI@clustered
selected = POI@selected
objeto = POI@objeto
newcoords = POI@newcoords
newcoords_1 = POI@newcoords_1
NC = length(POI@wordsInQuery)
cx=0
cy=0
r=1
etiq2 = POI@docs[,1]
etiq = POI@wordsInQuery
fishEYE = TRUE
M = POI@M
poisTextCol = POI@poisTextCol
colores = POI@colores[as.numeric(POI@docs[,2])]
poisCircleCol = POI@poisCircleCol
linesCol = POI@linesCol
itemsCol = POI@itemsCol
circleCol = POI@circleCol
LABELS = POI@LABELS
Pcoords = POI@Pcoords
newPcoords = POI@newPcoords
cgnsphrFont = POI@cgnsphrFont
newcoords_par = newcoords
newcoords_Pcoords = matrix(rep( c(newcoords,newcoords_1 ),
nrow(Pcoords)),nc=2,byrow=TRUE)
newcoords_puntosMediosPcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(newPcoords)),nc=2,byrow=TRUE)
newcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(objeto)),nc=2,byrow=TRUE)
objeto = objeto+newcoords
objetoH = toHiperbolico(objeto, M)
objetoC = objetoH$objetoC
objetoP = objetoH$objetoP
Pcoords = Pcoords + newcoords_Pcoords
PcoordsH = toHiperbolico(Pcoords, M)
PcoordsC = PcoordsH$objetoC
PcoordsP = PcoordsH$objetoP
newPcoords = newPcoords + newcoords_puntosMediosPcoords
newPcoordsH = toHiperbolico(newPcoords, M)
Pcoords_objetoC = newPcoordsH$objetoC
if (LABELS) {
PcoordsFI = matrix(toPolar(PcoordsC[,1],PcoordsC[,2]),nc=2)
PcoordsFI[,2] = 1 +.15
PcoordsFI = matrix(toCartesian(PcoordsFI[,1],PcoordsFI[,2]),nc=2)
}
if (clustered == TRUE) {
objetoC.bk <- objetoC
newobject <- H1WavoidCluttering(objetoC, 2)
objetoC <- newobject$newobjeto
etiq2 <- etiq2[newobject$uniques]
if (sum(is.na(itemsCol[newobject$uniques])) == 0) {
itemsCol <- itemsCol[newobject$uniques]
}
colores <- colores[newobject$uniques]
objetoP <- matrix(objetoP[newobject$uniques,], nc = 2)
pchs = newobject$uniques %in% which(newobject$clusters == 0)
pchs[pchs > 0] <- 19
pchs[pchs == 0] <- 23
Pminus = (newobject$uniques %in% which(newobject$clusters != 0))/2
} else {
Pminus = 0
pchs <- 19
}
plot(circulo(0,0,1, circleCol, PLOT = FALSE),cex=.5,ylim=c(-1.15,1.15),xlim=c(-1.15,1.15),
ann=FALSE, axes=F,type='l', col = circleCol)
points(objetoC,
pch = pchs, col = colores, bg = colores, cex = 1.5 - (objetoP[,2] - Pminus) )
text(objetoC[,1], objetoC[,2], labels = etiq2, cex = cgnsphrFont - objetoP[,2],
pos = 3, col = itemsCol)
abline(h = cx, col = 'grey', lty = 'dashed')
abline(v = cy, col = 'grey', lty = 'dashed')
points(PcoordsC, cex = 2, col = poisCircleCol)
lines(Pcoords_objetoC, col = linesCol)
segments(Pcoords_objetoC[nrow(Pcoords_objetoC),1],Pcoords_objetoC[nrow(Pcoords_objetoC),2],
Pcoords_objetoC[1,1],Pcoords_objetoC[1,2], col = linesCol)
if (LABELS) {
text(PcoordsFI[,1],PcoordsFI[,2],toupper(etiq),cex=.75, col = poisTextCol)
}
if (clustered == TRUE) {
objetoC <- objetoC.bk
}
if (selected != 1) {
circulin(0,0, POI@circRadio, objeto = objetoC)
}
if (!exists('POI.env')){
POI.env <<- new.env()
}
poiCOPY = POI
poiCOPY@objeto <- objeto
poiCOPY@objetoC <- objetoC
poiCOPY@newPcoords <- newPcoords
poiCOPY@Pcoords <- Pcoords
assign('POI',poiCOPY , envir = POI.env)
}
)
setMethod("POIPlot" ,
signature = "multiPOI",
function(POI){
par(bg=POI@plotCol, mar = c(0.1,0.1,0.1,0.1), family = POI@itemsFamily)
if (exists('POI.env')) {
if (exists('POI', envir = POI.env)) {
POI <- get('POI', envir = POI.env)
}
}
clustered = POI@clustered
selected = POI@selected
objeto = POI@objeto
newcoords = POI@newcoords
newcoords_1 = POI@newcoords_1
NC = length(POI@wordsInQuery)
cx=0
cy=0
r=1
etiq2 = POI@docs[,1]
etiq = POI@wordsInQuery
fishEYE = TRUE
M = POI@M
poisTextCol = POI@poisTextCol
if (class(POI) == 'mPOIAnd') {
colores = POI@colores[as.numeric(POI@docs[,2])]
} else {
colores = POI@colores
}
poisCircleCol = POI@poisCircleCol
linesCol = POI@linesCol
itemsCol = POI@itemsCol
circleCol = POI@circleCol
LABELS = POI@LABELS
Pcoords = POI@Pcoords
newPcoords = POI@newPcoords
cgnsphrFont = POI@cgnsphrFont
newcoords_par = newcoords
newcoords_Pcoords = matrix(rep( c(newcoords,newcoords_1 ),
nrow(Pcoords)),nc=2,byrow=TRUE)
newcoords_puntosMediosPcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(newPcoords)),nc=2,byrow=TRUE)
newcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(objeto)),nc=2,byrow=TRUE)
objeto = objeto+newcoords
objetoH = toHiperbolico(objeto, M)
objetoC = objetoH$objetoC
objetoP = objetoH$objetoP
Pcoords = Pcoords + newcoords_Pcoords
PcoordsH = toHiperbolico(Pcoords, M)
PcoordsC = PcoordsH$objetoC
PcoordsP = PcoordsH$objetoP
newPcoords = newPcoords + newcoords_puntosMediosPcoords
newPcoordsH = toHiperbolico(newPcoords, M)
Pcoords_objetoC = newPcoordsH$objetoC
if (LABELS) {
PcoordsFI = matrix(toPolar(PcoordsC[,1],PcoordsC[,2]),nc=2)
PcoordsFI[,2] = 1 +.15
PcoordsFI = matrix(toCartesian(PcoordsFI[,1],PcoordsFI[,2]),nc=2)
}
if (clustered == TRUE) {
objetoC.bk <- objetoC
newobject <- H1WavoidCluttering(objetoC, 2)
objetoC <- newobject$newobjeto
etiq2 <- etiq2[newobject$uniques]
if (sum(is.na(itemsCol[newobject$uniques])) == 0) {
itemsCol <- itemsCol[newobject$uniques]
}
colores <- colores[newobject$uniques]
objetoP <- matrix(objetoP[newobject$uniques,], nc = 2)
pchs = newobject$uniques %in% which(newobject$clusters == 0)
pchs[pchs > 0] <- 19
pchs[pchs == 0] <- 23
Pminus = (newobject$uniques %in% which(newobject$clusters != 0))/2
} else {
Pminus = 0
pchs <- 19
}
plot(circulo(0,0,1, circleCol, PLOT = FALSE),cex=.5,ylim=c(-1.15,1.15),xlim=c(-1.15,1.15),
ann=FALSE, axes=F,type='l', col = circleCol)
points(objetoC, pch = pchs, bg = colores, col = colores, cex = 1.5 - (objetoP[,2] - Pminus) )
text(objetoC[,1], objetoC[,2], labels = etiq2, cex = cgnsphrFont - objetoP[,2],
pos = 3, col = itemsCol)
abline(h = cx, col = 'grey', lty = 'dashed')
abline(v = cy, col = 'grey', lty = 'dashed')
points(PcoordsC,cex = 2, col = poisCircleCol)
lines(Pcoords_objetoC, col = linesCol)
segments(Pcoords_objetoC[nrow(Pcoords_objetoC),1],Pcoords_objetoC[nrow(Pcoords_objetoC),2],
Pcoords_objetoC[1,1],Pcoords_objetoC[1,2], col = linesCol)
if (LABELS) {
text(PcoordsFI[,1],PcoordsFI[,2],toupper(etiq),cex=.75, col = poisTextCol)
}
if (clustered == TRUE) {
objetoC <- objetoC.bk
}
if (selected != 1) {
circulin(0,0, POI@circRadio, objeto = objetoC)
}
if (!exists('POI.env')){
POI.env <<- new.env()
}
poiCOPY = POI
poiCOPY@objeto <- objeto
poiCOPY@objetoC <- objetoC
poiCOPY@newPcoords <- newPcoords
poiCOPY@Pcoords <- Pcoords
assign('POI',poiCOPY , envir = POI.env)
}
)
setMethod("POIPlot" ,
signature = "POIGraph",
function(POI){
par(bg=POI@plotCol, mar = c(0.1,0.1,0.1,0.1), family = POI@itemsFamily)
if (exists('POI.env')) {
if (exists('POI', envir = POI.env)) {
POI <- get('POI', envir = POI.env)
}
}
selected = POI@selected
objeto = POI@objeto
newcoords = POI@newcoords
newcoords_1 = POI@newcoords_1
NC = length(POI@wordsInQuery)
cx=0
cy=0
r=1
if(length(POI@docs) == 0) {
etiq2 <- matrix(seq(1:nrow(objeto)))
} else {
etiq2 = POI@docs[,1]
}
fishEYE = TRUE
M = POI@M
poisTextCol = POI@poisTextCol
colores = POI@colores[as.numeric(POI@docs[,2])]
poisCircleCol = POI@poisCircleCol
linesCol = POI@linesCol
itemsCol = POI@itemsCol
circleCol = POI@circleCol
LABELS = POI@LABELS
Pcoords = POI@Pcoords
newPcoords = POI@newPcoords
cgnsphrFont = POI@cgnsphrFont
EDGES = POI@EDGES
newcoords_par = newcoords
newcoords = matrix(rep( c(newcoords,newcoords_1),
nrow(objeto)),nc=2,byrow=TRUE)
objeto = objeto+newcoords
objetoH = toHiperbolico(objeto, M)
objetoC = objetoH$objetoC
objetoP = objetoH$objetoP
plot(circulo(0,0,1, circleCol, PLOT = FALSE),cex=.5,ylim=c(-1.15,1.15),xlim=c(-1.15,1.15),
ann=FALSE, axes=F,type='l', col = circleCol)
points(objetoC, pch=19, col = colores, cex = 1.5 - objetoP[,2])
if (length(EDGES) != 0) {
EDGES.lines = cbind(objetoC[ EDGES[ ,1] ,], objetoC[ EDGES[ ,2] ,])
segments(EDGES.lines[,1], EDGES.lines[,2], EDGES.lines[,3], EDGES.lines[,4], col = 'red')
}
text(objetoC[,1], objetoC[,2], labels = etiq2, cex = cgnsphrFont - objetoP[,2],
pos = 3, col = itemsCol)
abline(h = cx, col = 'grey', lty = 'dashed')
abline(v = cy, col = 'grey', lty = 'dashed')
if (selected != 1) {
circulin(0,0, POI@circRadio, objeto = objetoC)
}
if (!exists('POI.env')){
POI.env <<- new.env()
}
poiCOPY = POI
poiCOPY@objeto <- objeto
poiCOPY@objetoC <- objetoC
assign('POI',poiCOPY , envir = POI.env)
}
)
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