The goal of forImage
is to facilitate foraminiferal test measurement
and biomass estimation.
The package is proposed as an alternative to manual and/or multi-software dependent methods for biometry and biomass estimation.
The package requires Python >= 3.5.
You can install forImage
from github with:
remotes::install_github("ThaiseRF/forImage", build_vignettes = TRUE)
# Using `build_vignettes = TRUE` will slow down the install, but is necessary if
# you want to read the vignette, which is recommended
Use install_measure()
to install all Python modules dependencies
(scipy
, imutils
, numpy
, pandas
, Pillow
and OpenCV
) at once
in a virtual environment. This function is a wrapper of reticulate
py_install()
and requires a conda installation on Windows.
To install the Python modules via pip on Ubuntu:
sudo apt-get install python-pip
sudo pip install pip --upgrade
sudo pip install scipy
On Windows:
python -m pip install --upgrade pip
pip install scipy
On macOs:
python3 -m pip install --upgrade pip
pip3 install scipy
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