Nothing
# Copyright (c) 2020, ETH Zurich
test_that("run_simulation works", {
skip_on_cran()
#get correct path or correct input objects
#take data from case study 1 (Hagen et al. 2020)
datapath <- system.file(file.path("extdata", "CaseStudy1"), package="gen3sis")
config <- create_input_config(file.path(datapath,"config/config_rte.R"))
#run only the latest time-steps
config$gen3sis$general$start_time <- 5
#re-set call of observer
config$gen3sis$general$end_of_timestep_observer <- function(data, vars, config){}
tmp_output <- tempdir()
s <- run_simulation(config = config,
landscape = file.path(datapath,"landscape"), output_directory = tmp_output)
ref_summary <- readRDS(file.path(datapath, "reference_saves", "sgen3sis_summary.rds"))
expect_true(all.equal(ref_summary, s$summary))
expect_true(tools::md5sum(file.path(s$parameters$directories$output, "phy.nex")) == tools::md5sum(file.path(datapath, "reference_saves", "phy.nex")))
})
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