Nothing
inst/genepop-shiny/pages/pages_def_opts6.R
In genepop: Population Genetic Data Analysis Using Genepop
tabOpt61 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy61", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt61", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt61All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele identity (F-statistics) for all populations",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt61out")
))
)
tabOpt62 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy62", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt62", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt62All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele identity (F-statistics) for all population pairs",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt62out")
))
)
tabOpt63 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy63", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt63", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt63All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele size (Rho-statistics) for all populations",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt63out")
))
)
tabOpt64 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy64", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt64", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt64All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele size (Rho-statistics) for all population pairs",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt64out")
))
)
tabOpt65 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt65.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy65", label = h4("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
radioButtons("isolationStatistic65", label = h4("Isolation Statistic"),
choices = list("a" = "a", "e" = "e"), selected = "e"),
radioButtons("geographicScale65", label = h4("Geographic Scale"),
choices = list("Log" = "2D", "Linear" = "1D"), selected = "2D"),
sliderInput("coverage65",label="CIcoverage", min=0, max = 1, step=0.01, value = 0.95),
numericInput("minDistance65", "Minimal geographic distance", 0.0001, min = 0, max = 1000000000),
numericInput("maxDistance65", "Maximal geographic distance", 1000000000, min = 0, max = 1000000000),
textInput("testPoint65", "Test Point", "NA"),
numericInput("mantelSeed65", "Mantel Seed", 87654321, min = 0, max = 1000000000),
radioButtons("mantelRankTest65", label = h4("Mantel Rank Test"),
choices = list("True" = "True", "False" = "False"), selected = "False"),
numericInput("mantelPermutations65", "Mantel Permutations", 1000, min = 0, max = 100000),
actionButton("RunOpt65", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt65All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Isolation by distance between individuals",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt65out")
))
)
tabOpt66 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt66.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy66", label = h4("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
radioButtons("isolationStatistic66", label = h4("Isolation Statistic"),
choices = list("Fst/(1-Fst)" = "F/(1-F)", "Common denominator" = "SingleGeneDiv"), selected = "F/(1-F)"),
radioButtons("geographicScale66", label = h4("Geographic Scale"),
choices = list("Log" = "2D", "Linear" = "1D"), selected = "2D"),
sliderInput("coverage66",label="CIcoverage", min=0, max = 1, step=0.01, value = 0.95),
numericInput("minDistance66", "Minimal geographic distance", 0.0001, min = 0, max = 1000000000),
numericInput("maxDistance66", "Maximal geographic distance", 1000000000, min = 0, max = 1000000000),
textInput("testPoint66", "Test Point", "NA"),
numericInput("mantelSeed66", "Mantel Seed", 87654321, min = 0, max = 1000000000),
radioButtons("mantelRankTest66", label = h4("Mantel Rank Test"),
choices = list("True" = "True", "False" = "False"), selected = "False"),
numericInput("mantelPermutations66", "Mantel Permutations", 1000, min = 0, max = 100000),
actionButton("RunOpt66", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt66All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Isolation by distance between groups",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt66out")
))
)
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genepop documentation built on Jan. 22, 2023, 1:07 a.m.
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tabOpt61 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy61", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt61", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt61All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele identity (F-statistics) for all populations",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt61out")
))
)
tabOpt62 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy62", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt62", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt62All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele identity (F-statistics) for all population pairs",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt62out")
))
)
tabOpt63 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy63", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt63", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt63All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele size (Rho-statistics) for all populations",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt63out")
))
)
tabOpt64 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt61-64.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy64", label = h3("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
actionButton("RunOpt64", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt64All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Allele size (Rho-statistics) for all population pairs",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt64out")
))
)
tabOpt65 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt65.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy65", label = h4("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
radioButtons("isolationStatistic65", label = h4("Isolation Statistic"),
choices = list("a" = "a", "e" = "e"), selected = "e"),
radioButtons("geographicScale65", label = h4("Geographic Scale"),
choices = list("Log" = "2D", "Linear" = "1D"), selected = "2D"),
sliderInput("coverage65",label="CIcoverage", min=0, max = 1, step=0.01, value = 0.95),
numericInput("minDistance65", "Minimal geographic distance", 0.0001, min = 0, max = 1000000000),
numericInput("maxDistance65", "Maximal geographic distance", 1000000000, min = 0, max = 1000000000),
textInput("testPoint65", "Test Point", "NA"),
numericInput("mantelSeed65", "Mantel Seed", 87654321, min = 0, max = 1000000000),
radioButtons("mantelRankTest65", label = h4("Mantel Rank Test"),
choices = list("True" = "True", "False" = "False"), selected = "False"),
numericInput("mantelPermutations65", "Mantel Permutations", 1000, min = 0, max = 100000),
actionButton("RunOpt65", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt65All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Isolation by distance between individuals",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt65out")
))
)
tabOpt66 = fluidRow(align="left",
box(
title="Help",
div(div(withMathJax(includeMarkdown(getFile("opt66.md"))))),
width = 12,
solidHeader = FALSE,
status = config$color$help,
style='height:250px; overflow-y: scroll',
collapsible = TRUE,
collapsed = TRUE
),
column(width = 3,
box(
title = "Params",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$param,
radioButtons("ploidy66", label = h4("Ploidy"),
choices = list("Haploid" = "Haploid", "Diploid" = "Diploid"), selected = "Diploid"),
radioButtons("isolationStatistic66", label = h4("Isolation Statistic"),
choices = list("Fst/(1-Fst)" = "F/(1-F)", "Common denominator" = "SingleGeneDiv"), selected = "F/(1-F)"),
radioButtons("geographicScale66", label = h4("Geographic Scale"),
choices = list("Log" = "2D", "Linear" = "1D"), selected = "2D"),
sliderInput("coverage66",label="CIcoverage", min=0, max = 1, step=0.01, value = 0.95),
numericInput("minDistance66", "Minimal geographic distance", 0.0001, min = 0, max = 1000000000),
numericInput("maxDistance66", "Maximal geographic distance", 1000000000, min = 0, max = 1000000000),
textInput("testPoint66", "Test Point", "NA"),
numericInput("mantelSeed66", "Mantel Seed", 87654321, min = 0, max = 1000000000),
radioButtons("mantelRankTest66", label = h4("Mantel Rank Test"),
choices = list("True" = "True", "False" = "False"), selected = "False"),
numericInput("mantelPermutations66", "Mantel Permutations", 1000, min = 0, max = 100000),
actionButton("RunOpt66", label = "Run", icon("paper-plane"), style=config$color$runButton)
),
box(
title = "Dowload",
width = NULL,
solidHeader = TRUE,
align="center",
status = config$color$dowload,
style='height:100px;',
br(),
downloadButton('downloadOpt66All', label = "Results", class=config$color$dowloadButton)
)
),
column(width = 9,
box(
title="Isolation by distance between groups",
width = NULL,
solidHeader = TRUE,
status = config$color$result,
style='height:600px; overflow-y: scroll',
verbatimTextOutput("Opt66out")
))
)
Try the genepop package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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