tests/testthat/test-pmx-all-compute.R

In ggPMX: 'ggplot2' Based Tool to Facilitate Diagnostic Plots for NLME Models

context("Test computing Shrinkage")
ctr <- theophylline()
ctr2 <- data.table(x = c(2, 3))

#------------------- pmx_comp_shrink start ------------------------------------


test_that("pmx_comp_shrink: params: ctr result: sd and var are calculated correctly", {
  expect_identical(
    c(0.1125175, 0.9469996, 0.7423478, 0.0579371, 0.7697818, 0.4924055),

    round(digits=7, as.vector(
      sapply(c("var", "sd"), function(n) pmx_comp_shrink(ctr, fun=n)[["SHRINK"]]))
    )

  )
})


test_that("pmx_comp_shrink: params: ctr is controller result:data.table", {
  expect_true(inherits(pmx_comp_shrink(ctr = ctr), "data.table"))
})

test_that("pmx_comp_shrink: params: ctr is controller
          result: identical structure", {
  expect_identical(
    colnames(pmx_comp_shrink(ctr = ctr)),
    c("EFFECT", "OMEGA", "SHRINK", "POS", "FUN")
  )
  expect_identical(
    pmx_comp_shrink(ctr = ctr)[[1]],
    c("Cl", "V", "ka")
  )
  comp_shr <- pmx_comp_shrink(ctr = ctr)
  c("Cl", "V", "ka")
  expect_true(is.null(comp_shr$strat.facet))
  expect_true(is.null(comp_shr$strat.color))
  expect_true(is.null(comp_shr$filter))
})

test_that("pmx_comp_shrink: params: ctr is controller, filter
          result: identical structure", {
  comp_shr <- pmx_comp_shrink(ctr = ctr, filter = FUN == sd)
  expect_true(is.null(comp_shr$filter))
})

test_that("pmx_comp_shrink: params: ctr is controller result:data.table", {
  expect_true(inherits(pmx_comp_shrink(ctr = ctr), "data.table"))
})

test_that(
  "pmx_comp_shrink: params:  ctr is controller and function in (var,sd)
          result: right structure of result data.table",
  {
    expect_true(all(sapply(pmx_comp_shrink(ctr = ctr, fun = "sd")[[5]], function(x) {
      x == "sd"
    })))
  }
)

test_that("pmx_comp_shrink: params: ctr is not controller result: error", {
  expect_error(pmx_comp_shrink(ctr = ctr2))
})
#------------------- pmx_comp_shrink end --------------------------------------