gquad-package: A package for predicting G quadruplex motif(s)
The gquad-package provides two funcions for prediction: gquad and gquadO. gquad predicts without including overlaps, while gquadO includes overlaps. Nucleotide sequence can be provided in raw or fasta format or as GenBank accession number(s). Internet is needed to connect to GenBank database, if accession number(s) is given as argument. A dataframe of G quadruplex motif(s) position, sequence and length is returned. If more than one nucleotide sequence is provided as argument, an input ID is returned for motif(s) predicted from each input sequence.
Hannah O. Ajoge
paper under review
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