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## Copyright (c) 2016, Flowminder Foundation, Forrest R. Stevens, Dana R.
## Thomson
##
## Permission is hereby granted, free of charge, to any person obtaining
## a copy of this software and associated documentation files (the
## "Software"), to deal in the Software without restriction, including
## without limitation the rights to use, copy, modify, merge, publish,
## distribute, sublicense, and/or sell copies of the Software, and to
## permit persons to whom the Software is furnished to do so, subject to
## the following conditions:
##
## The above copyright notice and this permission notice shall be
## included in all copies or substantial portions of the Software.
##
## THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
## EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
## MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
## NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE
## LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION
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## WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
#' @author Forrest R. Stevens, \email{forrest.stevens@louisville.edu}
#' @title Most common stratum calculator
#'
#' @description
#' For each cell in the user-defined "coarse grid" used to select
#' spatially-representative samples (i.e. when \code{cfg_sample_spatial ==
#' TRUE}), this function calculates the stratum that occurs most often within
#' each course grid cell.
#'
#' @param rast \code{data.table} object. This \code{data.table} where each cell
#' that lies within a larger grid cell is represented as a row. For each row,
#' the variable \code{grid_id} is the ID of the cell from the coarser grid,
#' \code{sampled} denotes whether a cell has been sampled, \code{stratum}
#' defines the stratum each cell lies within, and \code{raster_index} is a
#' unique value for each cell in the raster.
#'
#' @return Vector of values representing the stratum that occurs most often
#' within a given subset of the raster.
#'
#' @export
gs_mode <- function(rast) {
ux <- unique(rast)
return(ux[which.max(tabulate(match(rast, ux)))])
}
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