kmeRs_score_and_sort: Score And Sort The Similarity Matrix
In kmeRs: K-Mers Similarity Score Matrix
Description
Usage
Arguments
Value
Examples
View source: R/kmeRs_score_and_sort.R
Description
The kmeRs_score_and_sort function sums the partial scores and sort the data.frame
to indicate the most 'different' k-mers
Usage
1
Arguments
kmeRs_similarity_matrix
the similarity matrix calculated by kmeRs_similarity_matrix function
Value
sorted similarity matrix with global.score column added; is returned as a data.frame
Examples
1
2
3
4
# Calculate the example BLOSUM62 matrix and score the result
example <- kmeRs_similarity_matrix(kmers_given = c("A", "T", "C", "G"), submat = "BLOSUM62")
kmeRs_score_and_sort(example)
kmeRs documentation built on May 2, 2019, 6:46 a.m.
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Description Usage Arguments Value Examples
View source: R/kmeRs_score_and_sort.R
Description
The kmeRs_score_and_sort function sums the partial scores and sort the data.frame
to indicate the most 'different' k-mers
Usage
1 |
Arguments
kmeRs_similarity_matrix |
the similarity matrix calculated by |
Value
sorted similarity matrix with global.score column added; is returned as a data.frame
Examples
1 2 3 4 | # Calculate the example BLOSUM62 matrix and score the result
example <- kmeRs_similarity_matrix(kmers_given = c("A", "T", "C", "G"), submat = "BLOSUM62")
kmeRs_score_and_sort(example)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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