LongSeq: Long protein sequence

In localScore: Package for Sequence Analysis by Local Score

Long protein sequence

Description

A long protein sequence.

Usage

LongSeq

Format

A character string with 1093 characters corresponding to Q60519.fasta in UniProt Data base.

Source

https://www.uniprot.org/

Examples

data(LongSeq)
LongSeq
nchar(LongSeq)
data(dico)
LongSeqScore=CharSequence2ScoreSequence(LongSeq,dico)
LongSeqScore[1:50]
localScoreC(LongSeqScore)$localScore
LS=localScoreC(LongSeqScore)$localScore[1]
prob1 = scoreSequences2probabilityVector(list(LongSeqScore))
daudin(localScore = LS, sequence_length = nchar(LongSeq),
               score_probabilities = prob1,
               sequence_min = min(LongSeqScore),
               sequence_max = max(LongSeqScore))
karlin(localScore = LS, sequence_length = nchar(LongSeq),
score_probabilities = prob1,
sequence_min = min(LongSeqScore),
sequence_max = max(LongSeqScore))

localScore documentation built on May 17, 2022, 5:09 p.m.