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# Function: Determines different response patterns in a sample.
# Copyright (C) 2011 David Preinerstorfer
# david.preinerstorfer@univie.ac.at
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details. A copy may be obtained at
# http://www.r-project.org/Licenses/
resp.patterns <-function(data.matrix){
data.matrix <- na.omit(as.matrix(data.matrix))
#recode answer vectors to strings
fu <- function(x){paste(x, collapse = "")}
pat <- apply(data.matrix, 1, fu)
#count patterns
tab <- table(pat)
#return pattern-strings into answer vectors
patterns <- matrix(as.numeric(unlist(strsplit(names(tab), ""))), ncol = dim(data.matrix)[2], byrow = TRUE)
#compute scores
scores <- apply(patterns, 1, sum)
#return different patterns, their counts and scores
return(cbind(patterns, "count" = as.numeric(tab), scores)[order(scores),])
}
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