View source: R/one_paprent_single_map_hmm.R
est_rf_hmm_single_one_parent | R Documentation |
Multilocus analysis using Hidden Markov Models (single parent, single phase)
est_rf_hmm_single_one_parent( input.seq, input.ph.single, info.parent = 1, uninfo.parent = 2, rf.vec = NULL, global.err = 0, tol = 0.001, verbose = FALSE, ret.map.no.rf.estimation = FALSE )
void |
internal function to be documented |
Marcelo Mollinari, mmollin@ncsu.edu
s <- make_seq_mappoly(solcap.dose.map[[1]]) full.phase <- solcap.dose.map[[1]]$maps[[1]]$seq.ph P1.map <- est_rf_hmm_single_one_parent(s, full.phase, info.parent = 1, uninfo.parent = 2) plot(P1.map) P2.map <- est_rf_hmm_single_one_parent(s, full.phase, info.parent = 2, uninfo.parent = 1) plot(P2.map) plot_map_list(list(Atlantic = P1.map, B1829 = P2.map), , horiz = FALSE)
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