class_from_obs_id: Retrieve classifications from observation IDs

Description Usage Arguments Value

View source: R/extract_taxonomy--parsers.R

Description

Retrieve taxonomic classifications from observation (e.g. sequence) IDs using a specified database.

Usage

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class_from_obs_id(obs_id, database = c("ncbi", "none"), batch_size = 100,
  ...)

Arguments

obs_id

(character) An unique observation (e.g. sequence) identifier for a particular database. Requires an internet connection.

database

(character of length 1) The name of the database that patterns given in parser will apply to. Valid databases include "ncbi", "itis", "eol", "col", "tropicos", "nbn", and "none". "none" will cause no database to be quired; use this if you want to not use the internet. NOTE: Only "ncbi" has been tested so far.

...

Not used

Value

list of data.frame


metacoder documentation built on May 30, 2017, 3:11 a.m.