R/fecal_waters.R

#' fecal waters 
#' 
#' @description Data containing the abundance of 474 metaproteins 
#'    expressed in spectral counts. Data generated from an Orbitrap 
#'    Fusion Lumos  Tribrid Mass Spectrometer. The dataset contains 
#'    the metaproteomes from three extraction methods: i) "Q" for Qiagen, 
#'    ii) "FW" for fecal waters, and iii) "Q_FW" for the mixture 
#'    of Qiagen and fecal waters. Data generated in the context of 
#'    the project Microbiome Rapid Access (Université Paris-Saclay).
#' 
#' @docType data
#' 
#' @usage data(fecal_waters)
#' 
#' @keywords datasets
#' 
#' @format A list of four elements defined as "spectral_count_object", 
#'    generated with the function "getsc_specific"
#'    \describe{
#'        \item{SC_subgroups}{dataframe with 9 samples containing 474 
#'           subgroups or metaproteins with abundance expressed as 
#'           spectral counts}
#'        \item{metadata}{information related to the 9 samples from the 
#'           experiment}
#'        \item{peptides_proteins}{information related to each of the 
#'           1557 identified peptides}
#'        \item{type_object}{character indicating the type of object}
#'    }
#' 
"fecal_waters"

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metaprotr documentation built on Feb. 5, 2021, 9:06 a.m.