Description Usage Arguments Details Author(s) See Also Examples

Generic functions for `Rarefac`

object.

1 2 3 4 5 6 |

`x` |
A |

`type` |
Type of plot, default is "b", giving markers with lines between. |

`pch` |
Marker type, default is 16, a filled circle. |

`xlab` |
Text for horizontal axis. |

`ylab` |
Text for vertical axis. |

`...` |
Optional graphical arguments. |

`object` |
A |

A `Rarefac`

object is a small (S3) extension to a matrix. The first column contains
the cumulative number of unique gene clusters found when considering 1,2,...,G genomes in a pan-matrix.
Thus, the `Rarefac`

object is a matrix with G rows. Any additional columns will hold similar
numbers, but for random shufflings of the genome's ordering. A `Rarefac`

object is typically
created by the function `rarefaction`

.

The `plot.Rarefac`

function will display the content of the `Rarefac`

object as a plot
of the mean value in rows 1,2,...,G, where G is the total number of genomes in the study.

The `summary.Rarefac`

function will display a text giving the same information as
`plot.Rarefac`

.

Lars Snipen and Kristian Hovde Liland.

1 | ```
# See examples in the Help-file for rarefaction.
``` |

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