pathway_class: Convert metabolite set (multiple) / tar.gz to list

In mseapca: Metabolite set enrichment analysis for factor loading in principal component analysis

Description

Convertion of KEGG's tar.gz files (e.g. hsa.tar.gz) to metabolite set list

Usage

pathway_class(filepath)

Arguments

filepath

file path of KEGG's tar.gz files

Details

The tar.gz files should be downloaded from KEGG FTP according to your own licence.

Value

list of metabolite set name and metabolite IDs

Author(s)

Hiroyuki Yamamoto

Examples

	# filepath <- "C:/hsa.tar.gz"		# *.tar.gz downloaded from KEGG
	# Z <- pathway_class(filepath)		# convert to list

mseapca documentation built on May 1, 2019, 7:31 p.m.