Nothing
setClass("experiment",
representation = representation(
mm = "mdm",
obs = "numeric")
)
"get_mdm" <- function(x){x@mm}
"get_obs" <- function(x){x@obs}
# there are no occurrences of '@' below this line.
".experiment_valid" <- function(object){
if(nrow(get_mdm(object)) != length(get_obs(object))){
return("length mismatch")
} else {
return(TRUE)
}
}
setValidity("experiment" , .experiment_valid)
"experiment" <- function(mm,obs){
new("experiment",mm=mm,obs=obs)
}
".experiment_print" <- function(x){
as.data.frame(x)
}
"print.experiment" <- function(x, ...){
jj <- .experiment_print(x, ...)
print(jj)
return(invisible(jj))
}
setMethod("show", "experiment", function(object){print.experiment(object)})
setMethod("levels","experiment",function(x){levels(get_mdm(x))})
setAs("experiment","mhp",function(from){
as.mhp(get_mdm(from))
} )
setMethod("as.mhp","experiment",function(x){as(x,"mhp")})
setAs("experiment","data.frame",function(from){
data.frame(as.data.frame(get_mdm(from)),obs=get_obs(from))
} )
setMethod("as.data.frame",signature="experiment",
function(x){as(x,"data.frame") })
setMethod("head",signature="experiment",function(x,n=6,...){
experiment(head(get_mdm(x),n=n,...), head(get_obs(x),n=n,...))
} )
setMethod("head",signature="experiment",function(x,n=6,...){
experiment(tail(get_mdm(x),n=n,...), tail(get_obs(x),n=n,...))
} )
setMethod("[", signature(x="experiment"),
function(x,i,j,drop=FALSE){
experiment(
mm = get_mdm(x)[i,j,drop=drop],
obs = get_obs(x)[i]
)
} )
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