+ model BMM in mvgls + "predict" function for mvgls + plot function for mvgls objects + dfa on gls fit (beta) + fix typo in mvSHIFT output print + fix error in estimation of OU with n-ultrametric trees in mvgls + new adjusted bounds for parameters search + fix typo in summary.mvgls print option in the calculation of the AIC. + handling of design matrices with deficient ranks in regressions
+ CRAN request to remove the export statements for S3 classes + replace is.binary.tree to is.binary.phylo, the former being deprecated from "ape". + fix error in mvSHIFT. The wrong values were returned (but not printed) for "beta" in BMEB models.
+ replaced "F" by "FALSE" in example files to follow CRAN policies + optimization of some diagonal matrices computations + bug fix in mvSIM (SHIFT model without simmap tree provided)
+ update help pages of various functions + Bugs fixes for bounds in the parameter search in "mvgls", and missing values estimation in "estim" with OU1 model. + manova.gls: MANOVA methods and multivariate statistics based on ML (n<p) and PL (any p) model fit. + Phyllostomid dataset from Monteiro & Nogueira (2011) + EIC: function to compute the EIC score for both ML and PL techniques (class mvgls)
+ mvgls: a multivariate GLS function based on ML (n<p) and PL (any p). + mvgls.pca: a function to perform PCA on serially correlated data. + GIC: function to compute the GIC score for both ML and PL techniques (class mvgls) + suite of functions to use with mvgls + Bug fix for "mvSIM" with sparse methods and speed-up for "BM1" model. + Typo fix in testLRT + Typo fix in weight-matrix-mvmorph.c (indexing of variable) + add options for the pruning algorithm. + fix error with NA values for the mvOU function.
+ Registration of compiled codes + New pruning algorithm to compute the determinant and square root matrix + Bugs fixes in "estim" for ancestral state reconstructions with OU models and "smean=FALSE" option. + Bug fix for "estim" with univariate data. + Corrected bug in mvSIM. + Fix bug with matrix parametrization "equaldiagonal". + add the "svd" option for simulating traits in mvSIM. + Bug fix in "mvEB".
+ Allows estimating the missing cases (NA) + Allows estimating trends + User defined constrained models and parameterizations + Return the log-likelihood function + Simulating traits on package vignette + Multivariate models for time-series (TS) + Partial implementation of a tests-suite
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