exec/example.R

In optparse: Command Line Option Parser

#!/usr/bin/env Rscript
# Copyright 2010-2013 Trevor L Davis <trevor.l.davis@gmail.com>
# Copyright 2008 Allen Day
#  
#  This file is free software: you may copy, redistribute and/or modify it  
#  under the terms of the GNU General Public License as published by the  
#  Free Software Foundation, either version 2 of the License, or (at your  
#  option) any later version.  
#  
#  This file is distributed in the hope that it will be useful, but  
#  WITHOUT ANY WARRANTY; without even the implied warranty of  
#  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU  
#  General Public License for more details.  
#  
#  You should have received a copy of the GNU General Public License  
#  along with this program.  If not, see <http://www.gnu.org/licenses/>.  
suppressPackageStartupMessages(library("optparse"))
suppressPackageStartupMessages(library("stats"))

# specify our desired options in a list
# by default OptionParser will add an help option equivalent to 
# make_option(c("-h", "--help"), action="store_true", default=FALSE, 
#               help="Show this help message and exit")
option_list <- list( 
    make_option(c("-v", "--verbose"), action="store_true", default=TRUE,
        help="Print extra output [default]"),
    make_option(c("-q", "--quietly"), action="store_false", 
        dest="verbose", help="Print little output"),
    make_option(c("-c", "--count"), type="integer", default=5, 
        help="Number of random normals to generate [default %default]",
        metavar="number"),
    make_option("--generator", default="rnorm", 
        help = "Function to generate random deviates [default \"%default\"]"),
    make_option("--mean", default=0, 
        help="Mean if generator == \"rnorm\" [default %default]"),
    make_option("--sd", default=1, metavar="standard deviation",
        help="Standard deviation if generator == \"rnorm\" [default %default]")
    )
                                        
# get command line options, if help option encountered print help and exit,
# otherwise if options not found on command line then set defaults, 
opt <- parse_args(OptionParser(option_list=option_list))

# print some progress messages to stderr if "quietly" wasn't requested
if ( opt$verbose ) { 
    write("writing some verbose output to standard error...\n", stderr()) 
}

# do some operations based on user input
if( opt$generator == "rnorm") {
    cat(paste(rnorm(opt$count, mean=opt$mean, sd=opt$sd), collapse="\n"))
} else {
    cat(paste(do.call(opt$generator, list(opt$count)), collapse="\n"))
}
cat("\n")