A dataset containing the results of pathfindR's clustering and
partitioning workflow performed on the rheumatoid arthritis
RA_output. The clustering and partitioning
cluster_enriched_terms was used with the default settings
(i.e. hierarchical clustering was performed and the agglomeration method
Generated on Aug 20, 2021.
A data frame with 113 rows and 11 columns:
ID of the enriched term
Description of the enriched term
Fold enrichment value for the enriched term
the number of iterations that the given term was found to enriched over all iterations
the median support (proportion of active subnetworks leading to enrichment within an iteration) over all iterations
the lowest adjusted-p value of the given term over all iterations
the highest adjusted-p value of the given term over all iterations
the up-regulated genes in the input involved in the given term, comma-separated
the down-regulated genes in the input involved in the given term, comma-separated
the cluster to which the enriched term is assigned
whether the enriched term is the "Representative" term in its cluster or only a "Member"
RA_input for the RA differentially-expressed genes data frame
RA_exp_mat for the RA differentially-expressed genes expression matrix
run_pathfindR for details on the pathfindR enrichment analysis
RA_output for the RA example pathfindR enrichment output
cluster_enriched_terms for details on clustering methods
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