The data frame containing the results of pathfindR's active-subnetwork-oriented
enrichment workflow performed on the rheumatoid arthritis dataset GSE84074
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE84074. Analysis via
run_pathfindR was performed using the default settings.
Generated on Oct 19, 2020.
A data frame with 35 rows and 9 columns:
ID of the enriched term
Description of the enriched term
Fold enrichment value for the enriched term
the number of iterations that the given term was found to enriched over all iterations
the median support (proportion of active subnetworks leading to enrichment within an iteration) over all iterations
the lowest adjusted-p value of the given term over all iterations
the highest adjusted-p value of the given term over all iterations
the up-regulated genes in the input involved in the given term, comma-separated
the down-regulated genes in the input involved in the given term, comma-separated
RA_input for the RA differentially-expressed genes data frame
RA_output for the RA example pathfindR enrichment output
RA_clustered for the RA example pathfindR clustering output
RA_exp_mat for the RA differentially-expressed genes expression matrix
run_pathfindR for details on the pathfindR enrichment analysis
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