Nothing
## ----setup, include = FALSE---------------------------------------------------
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>"
)
## ----echo=FALSE---------------------------------------------------------------
branch = "master"
library(knitr)
sampleAnnotation = system.file(
"extdata",
paste0("example_peps-", branch),
"example_imply",
"sample_table_pre.csv",
package = "pepr"
)
sampleAnnotationDF = read.table(sampleAnnotation, sep = ",", header = T)
knitr::kable(sampleAnnotationDF, format = "html")
## ----echo=FALSE,message=FALSE,collapse=TRUE,comment=" "-----------------------
library(pepr)
projectConfig = system.file(
"extdata",
paste0("example_peps-", branch),
"example_imply",
"project_config.yaml",
package = "pepr"
)
.printNestedList(yaml::read_yaml(projectConfig))
## ----echo=FALSE---------------------------------------------------------------
sampleAnnotation = system.file(
"extdata",
paste0("example_peps-", branch),
"example_imply",
"sample_table.csv",
package = "pepr"
)
sampleAnnotationDF = read.table(sampleAnnotation, sep = ",", header = T)
kable(sampleAnnotationDF, format = "html")
## -----------------------------------------------------------------------------
projectConfig = system.file(
"extdata",
paste0("example_peps-", branch),
"example_imply",
"project_config.yaml",
package = "pepr"
)
p = Project(projectConfig)
## -----------------------------------------------------------------------------
sampleTable(p)
## -----------------------------------------------------------------------------
config(p)
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